Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02392 AAATTCAAGCAATGCACACATCCGAACGAAACCCAAGGATGGCAAATAGGCGAGGAGCTTGGGCTTGATCCTCAACAAGTAAAATTTTGGTTTCAAAATAAGAAGACACAATTAAGGACTATAATTGAACGATTAGATATCAATGTTCTTCGGCTTGAGAACCAAAAAATACGATCAGAAAATCGCAAAATAAGAGAGACTTTGGATAATGTAATTTGTGCACCTTGTGGGGGTAAAGCCATGGGACCAAAAGAGCAAGCACTTTCTTTGGAAATCTTAAGAGTGCAAAATATTCTATTAACTAAAGAGTGTGAGAGAATAAGCTCACTTCTGGCAAAGAATGGGGTAAATCCAGGGCTACTTCCTTCCTTTCCTTCTTGTTCTTCTTCATATGATACGTCACGAGGAAGATTAATAAACAAAATGGTTGAAATTCCTACTCCAAATCATGATCTTCATATTCATGCTGGCGATCAAAGTACCCCTAATCCTTATCAACTTGCTCCTGGTCAACATTATATTCCTGATATTCATCAAGATATAGCTTTTCCAACTCTTTGCCAAGATATACCTATTCTTACTTCTGGCCATAATCAAAACATTCCTACTCTAGTGATTGATCAACCTATTCCTTCACTTACTACTTCTTCCATTGATCAAAATATTCCAGCTCTTGATACCACTCTTAGTGAAGATGACACTATTTTGATTTCTTGTATTGATTATAATATCCCAGCGTTGGTTACAGCTCTTGATCAAAATATTCCCGCATTGACTTCTACTCATGATCAAAATAATAACTATCATGTTGTTGAGCAAGAAATTCAAAGGCCTAATCATGGAGTCAATATTCCTTCTGTTACGCCTACCCTGAATCAAATTTTTCCATTTCTTGGTGAAGATATTTCTACCCTTCAACAGGATACTATGCCCTCACTTGATTTAGATTTAGATAAGATTCTTGAAATTTTGAACAATGATGATATCTTACTTCAACCAATGCCGAACCTAGGCGTAGATATGGAGAATGAACTAATGTTGAAGATTGCAAATAATGCTATGGAAGAATTAATGAAATTGTTGAGTATGAATGAGCCCTTCTGGTTTAGGTCTTTACTTGATGGTAAATTCATTCTTCAACGTGATATCTACCAAAGGACATTTCGTAGGAGTAATTGCTTAAGCGGACCTCATGCACGTATAGAATCTTCAAAAGACTCACGAGTAGTGAAGATGAGTGGGACACAACTCGTTGATATGTTTTTAAATTCGGACAAATGGGTTGATTTATTCCCCACGATTGTTAAAAAGGCCCAAACAATTGAAGTACTTGAAAGCAAAATACACATTCTTTCACCTTTGGTCCCAACTCGGGAATTCCTCTTCCTTCGTTATTGTAAACAAATTGCAGTAGGTGTATGGGCCATAGGGGATGTGTCACTTGATTCTTTAACATACAAAACCACTGTTACTCGTGCTTGGAGGCTTCCATCTGGATGCCTGATTCAAGAAATAGATCAAGGGATGTGCAGGGTTTCATGGGTGGAGCACGTAGAAGTGGATGATAAAATCCAAACTCACCAACTTTTTAGAGAGGTTATTTGTGGCAATAATGCATATGGAGCAGAAAGATGGGTTTTGGAACTTGAAAGAATGTGTGAGAGGTTGGCAAGCGCCTCAGCTGAAACTATACCTAGTTCAGAGGCTAGAGGAGAAAGTTTATGCTATTCGTTGTTCTTAGTGATTAGATCACCTAAAGGGAGGAGGAACATAATGCATTTGACCCATCGTATGGTTAAGACATTTTGTGGGGCTTTAAACATGAAAGATAATAAAAACTTCCCACACTTAACTAGGATGGATAATGGTGGCATTAGGATATCCATTCGGGTGAATAATACACAGCCAGATCTACCAAAAGGAATGATTATCAGTGCTGCTACCTCCTTCTGGCTTCCCCTCTCGCCTCAGAATGTTTTTGATTATTTGAGAGATAACAAAGAACGGGCTAAGTGGGATGTTCTATGTTCTGGAAGTGTAGGGCACGAGATTCAATGCATCTCAACAGGATGTAATCCTGAAAATTGTATTTTAGTCATGCGGCCATTCATCCCTAGAGAGAACAATGTAATGATTCTCCAAGAAAGTTATGCAGACGCTTTGGGATCTATGCTGGTATATGCTCCTTTTGATATGAAGACAATGAATAGGGCCATGATGGGGGACGATGCATCAATGTTGCCAATTCTTCCCTCTGGCATTACCATATCTTGGGATGGCCAATCAGGACAAGATGGAAAATCAGGAGGTTCATTGGTGACTCTTATGTTTCAAGTTTTGGCTTGTAGTCCATCTAGAATGGGCATGGTAGATGTTGAATTTGTAGGTTCTGTTAATACGCTTCTGATCTCAACGGTGGAAAAAATTAAAATTGCTTTGAAATGTTCCAATTTG 2454 0.3835 KFKQCTHPNETQGWQIGEELGLDPQQVKFWFQNKKTQLRTIIERLDINVLRLENQKIRSENRKIRETLDNVICAPCGGKAMGPKEQALSLEILRVQNILLTKECERISSLLAKNGVNPGLLPSFPSCSSSYDTSRGRLINKMVEIPTPNHDLHIHAGDQSTPNPYQLAPGQHYIPDIHQDIAFPTLCQDIPILTSGHNQNIPTLVIDQPIPSLTTSSIDQNIPALDTTLSEDDTILISCIDYNIPALVTALDQNIPALTSTHDQNNNYHVVEQEIQRPNHGVNIPSVTPTLNQIFPFLGEDISTLQQDTMPSLDLDLDKILEILNNDDILLQPMPNLGVDMENELMLKIANNAMEELMKLLSMNEPFWFRSLLDGKFILQRDIYQRTFRRSNCLSGPHARIESSKDSRVVKMSGTQLVDMFLNSDKWVDLFPTIVKKAQTIEVLESKIHILSPLVPTREFLFLRYCKQIAVGVWAIGDVSLDSLTYKTTVTRAWRLPSGCLIQEIDQGMCRVSWVEHVEVDDKIQTHQLFREVICGNNAYGAERWVLELERMCERLASASAETIPSSEARGESLCYSLFLVIRSPKGRRNIMHLTHRMVKTFCGALNMKDNKNFPHLTRMDNGGIRISIRVNNTQPDLPKGMIISAATSFWLPLSPQNVFDYLRDNKERAKWDVLCSGSVGHEIQCISTGCNPENCILVMRPFIPRENNVMILQESYADALGSMLVYAPFDMKTMNRAMMGDDASMLPILPSGITISWDGQSGQDGKSGGSLVTLMFQVLACSPSRMGMVDVEFVGSVNTLLISTVEKIKIALKCSNL 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02392 818 Gene3D - 348 534 IPR023393 -
Pste3g02392 818 SUPERFAMILY Bet v1-like 586 779 - -
Pste3g02392 818 Gene3D - 1 39 - -
Pste3g02392 818 ProSiteProfiles START domain profile. 339 558 IPR002913 GO:0008289
Pste3g02392 818 CDD homeodomain 2 39 IPR001356 GO:0003677
Pste3g02392 818 SUPERFAMILY Homeodomain-like 2 44 IPR009057 -
Pste3g02392 818 Coils Coil 35 67 - -
Pste3g02392 818 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 2 813 IPR042160 -
Pste3g02392 818 SMART START_1 348 555 IPR002913 GO:0008289
Pste3g02392 818 Pfam Homeodomain 2 39 IPR001356 GO:0003677
Pste3g02392 818 SUPERFAMILY Bet v1-like 340 557 - -
Pste3g02392 818 CDD START_ArGLABRA2_like 345 554 - -
Pste3g02392 818 ProSiteProfiles 'Homeobox' domain profile. 1 41 IPR001356 GO:0003677
Pste3g02392 818 Pfam START domain 349 555 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02392 Pste-Chr3 16954676 16958574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02392 311 813 Homeobox Transcription Factor Family AT1G73360 39.813 6.09e-117 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste3g02392 START 2.3e-30 CL0209