LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g02369	CCGTTGTTCCTCACTTCAGCAAACCCTAGCTAGCTATCCATTCGTCAATGGCTGCAAGTCCTTCCAAACCCCAACTGAGATTCCAATCCAATCCCAAATACTCGCCCGCTGTCACCCCCGACACTCCACAAACCCTACATCTTCGCAGATCCACGCGTGCCAAATCCCTCCTCTTCGATGCTCCCCAATCACCGCGCGAAATCCCTCTCACAACTCCAAAGCGGAGGACTCGGCGATCCATCCCTTATGTCCAGGAGGAATCTGCCGAAGACAAAGTCACAACCGTCAATGCATTGAAGAAGAAGAACGGGAAGGATTCAATTGAAGTTTCCTTCGCTCCGGTAACGCCAGCTTCGTCGGATAAGAGGAAGAGAAAGAGGGATTGTGAGGAAAGTGTTGTTACCAGAGCTAAAAGGAGGAAATCGGAAAATCAGAAAAGGAGTGCAAAATTGCCTGAGAGGCGCGTGTATTACAAAAAAGTGGTTTACGATGGAGGACAGTTTGCATTGGGGGATGATGTTTATGTTAAGAGGAGAGAAGATGCTTGCTCCGATGATGAAGATCCCGAAACGGAAGAGTGTAGAATGTGTTTTTCCTCAAATGATGAGGTCATGATTGAATGTGACGATTGTTTGGGTGGGTTTCATCTGAAATGCTTGAGGCCTCCATTGAAGGATGTTCCTGAAGGGGATTGGGTCTGTGGGTTCTGTGAACTTCGTAAGATGGGTAGGGAAGTTCAGTTTCCAAAGCCTCCAAAGGGTAAGAAATTAGTTAGGACTATGAGGGAGAAGCTTCTTTCCAGTCATTTGTGGGCTGCTCGTATTGAAAGCATATGGAGAGAGATAGATGGCAACTATTGGTGTCGCGTGCGCTGGTATATCATCCCAGAAGAGACTTCTGTTGGGCGGCAACCTCATAACCTGAGGAGGGAGCTATATCAAACTAACGAACTTGCCGACATTGAGATGGAATCTGTCCTTAGACATTGCTATGTCATGACCCCCAAAGAATATGCTAAAGCTAGCAACGAAGGGGATGATGTTTTCTTTTGTGAATATGAGTATGACAACCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAAAGAGAATGATGAAGAGACTGATAATGATGAAGACTGGAATCTCGAGAAATCAGACTCTGATTCAGATGAAGATATTGAATATGAAGAAAAAATATTAAAAATGTGCAATCTCAGCCATCAACAAGCCACTTAG	1247	0.4507	MAASPSKPQLRFQSNPKYSPAVTPDTPQTLHLRRSTRAKSLLFDAPQSPREIPLTTPKRRTRRSIPYVQEESAEDKVTTVNALKKKNGKDSIEVSFAPVTPASSDKRKRKRDCEESVVTRAKRRKSENQKRSAKLPERRVYYKKVVYDGGQFALGDDVYVKRREDACSDDEDPETEECRMCFSSNDEVMIECDDCLGGFHLKCLRPPLKDVPEGDWVCGFCELRKMGREVQFPKPPKGKKLVRTMREKLLSSHLWAARIESIWREIDGNYWCRVRWYIIPEETSVGRQPHNLRRELYQTNELADIEMESVLRHCYVMTPKEYAKASNEGDDVFFCEYEYDNHWHSFKRLADIDNEKENDEETDNDEDWNLEKSDSDSDEDIEYEEKILKMCNLSHQQAT	399

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g02369	399	SUPERFAMILY	FYVE/PHD zinc finger	165	227	IPR011011	-
	Pste3g02369	399	MobiDBLite	consensus disorder prediction	55	70	-	-
	Pste3g02369	399	Pfam	BAH domain	257	348	IPR001025	GO:0003682
	Pste3g02369	399	MobiDBLite	consensus disorder prediction	103	123	-	-
	Pste3g02369	399	PANTHER	OS08G0421900 PROTEIN	252	346	-	-
	Pste3g02369	399	MobiDBLite	consensus disorder prediction	43	73	-	-
	Pste3g02369	399	Gene3D	-	118	367	IPR043151	-
	Pste3g02369	399	MobiDBLite	consensus disorder prediction	98	134	-	-
	Pste3g02369	399	ProSitePatterns	Zinc finger PHD-type signature.	178	221	IPR019786	-
	Pste3g02369	399	SMART	PHD_3	177	222	IPR001965	-
	Pste3g02369	399	SMART	BAH_4	209	350	IPR001025	GO:0003682
	Pste3g02369	399	Pfam	PHD-finger	178	222	IPR019787	-
	Pste3g02369	399	MobiDBLite	consensus disorder prediction	354	381	-	-
	Pste3g02369	399	MobiDBLite	consensus disorder prediction	1	31	-	-
	Pste3g02369	399	MobiDBLite	consensus disorder prediction	356	381	-	-
	Pste3g02369	399	FunFam	Origin recognition complex subunit 1	173	240	-	-
	Pste3g02369	399	ProSiteProfiles	Zinc finger PHD-type profile.	175	224	IPR019787	-
	Pste3g02369	399	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	172	239	IPR013083	-
	Pste3g02369	399	ProSiteProfiles	BAH domain profile.	234	350	IPR001025	GO:0003682

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g02369	Pste-Chr3	16805629	16807577	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g02369	4	372	Core DNA Replication Machinery Family	AT4G12620	48.953	1.90e-106	330

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Pste3g02369		BAH	9.1e-13	No_clan