Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02345 ATGAGCTTTTCCATTGCACACTGCCACTACCCTCGTAATCTACCTCATGCTTCTGCAAACAAAGGAACCACACTTGATCATCGTTCAAACAAACCAGCTTCTATTGTTTCTTTGCTGCAGACTCCACCGCACCCTGTAAACAGAATTACCAAGTCCAATATTCAACCAGTCATTGACCTCTTAAAGTCCTGCGAAGAAAGTGGATCTCTAAAGCAAGCAAATTGCATTCATGGGCACCTTTTAAAATCGGGTTTTGGTGACCGCGAGTCCTTGGTGCTTATGAACCATGCAGTGCACGCGTATTCCAAGTGTAACGATTATAATGCAGCTTGTAGGCTGTTCAATGCAATGCCCCAGAGAAACGTGTTTTCCTGGACCGTTATGATTGTTGCATCCAATGAACATGGCCACTACCACAATGGGCTGGAGCTGTTTTGCATGATGTTGGAGCATGGCGTGTTGCCTGATGGGTTTGCCTTCTCTGCTCTTTTGCAGTCCTGTGTGGGGTTAAATTCGGTTGAGTTGGGTCAAATGGTGCATGCCCATGTTGTCGTCACAGGTTTTCTGATGCATACAGTTGTTGGCACATCTGTTCTCAACATGTATGCAAAGCTAGGAGAGAGTGAGAGTTCAGTTAAGGTCTTTAGCACAATGCCAGAGGTTAATATTGTCTCTTGGAATGCAATGATTTCAGGATTTACCTCTAATGGATTACACCTACAAGCATTTGATTGTTTTATCAATATGATTGAAGTAGGAGTCACACCTAATAATTTCACTTTGGTCAGTGTTTCCAAGGCAGTTGGGCAGTTAGCTGACATTCACAAATGTCACCAAGTGCACAAGTATGCTTCTAATTGGGGTTTGGATTCCAATACTTTGGTTGGAACAGCTCTTATTGATATGTACTCCAAGTGTGGGTCTATGTTTGATGCACAAACTCTTTTTGACAAGAAGTTTACTAGTTGTCTGGTTAACACGCCTTGGAATGCAATGATAACGGGTTACTCACAAGCTGGTTCTCACATAGAGGCTCTGGAACTGTTCACAAGAATGTGCCAAAATGATATCAAACCAGATATTTACACGTTCTGTTGTGTGTTTAACTCAATTGCTGCTTTGAAGTGTCTGAAATCCTTGAGGGAGACTCATGGAATGACATTGAAATATGGATTTGATGCACTGCAGATTAGTGCAACCAATGCCCTCGCTGATGCATATGCCAAATGTGACTCACTTGAAGCTGTAGAGAATGTATTTAATAGAATGGAAGATAAAGACATAGTATCTTGGACAACCATGGTGACTGCATATTGCCAATATTCTGAGTGGGGAAAAGCCTTGACCATCTTCTCACAGATGCGCAATGATGGCCTTGTGCCCAATCATTTTACCCTTTGTAGTGTGATCACTGCATGTGGAGGTCTTTGTTTACTAGAATATGATATGATCTCTGCTGTGCTTGTTAGTAAGAAGTTTGTTTGCAGTGGTGAGAGTGGGTCTGGGAAGACAGAAACAGCTAAAATTGCATTGCAATACTCCGCTGCTTTTGGTGGTGATGCAAGTTTTGCGGTAGAAAAAGAATTTCTTCAGATAAATCGCATACTAGAAGGTTTTGGAAATGCAAAAACATCTGGGAATAACAACTCTAGTAGATTTGGAAAGTTGATATGTGTAGCAAATATTCAAACCTCTGTAACTAGTGCTGCCCAGATGATGGATTGCAGTTCCCAGGAATTAATGGCAGCATTATGTAATAAAATCCAGTCTGATGAGGATGCTATAGCCAAAATTTTGACATTGAGGCAGGAAATTGAAAGAAGAGATGAAATTGCAAAATTCATCTATGCAAGCTTGTTTGACTGGCCACTAGAACAAATTAATGAGTCACTTCAAGTGGGTAAACAACTCACTGGGCAATCCAGAAGTATCCTTGATATTTATGGTTTTCAGAATTGTCAGGTGTGCAGTATGCATAATGTGTTTACTTATGTTTCAAAGAATGTTGACTATGTACTAAAAGTTCCTTGTATCACTTTTTTAGAAAAACAGTTTTATATAAATTATGCCAATGAGAGGATTCAACAACATTTTAATCAGCATATGTTTAAACTTGCGCAGGAGGACTATGAATTGGATGGCATTGATTGGACTACGGTAGATTTTGAGGACAATGAAGAGTGCTTGGATCTATTTGAGAAGCTTAGTGATTATGTTATCTTTGTTGCAAAATGTGCAGAAACCTGGTCTCTACTCTCTTTGTTGGATGAGGAGTCGAATTTAGCCAAGGCTTCAGGTTTAACATTTGCCAACAAACTTAAGCACCACCTGGATGCTAATGCTTGCTTTAAAGGAGAAAGAGGCAGAGCTTTCGGTGCACGTCACTATGCAAGGAAGGTTCTATATGATACAAATGACTTTCTAGAGAAGAACAGAGGCATGTTGTCTCCAGATTGTATTCAATTCCTGTCATTGTGTAACTGTGAATTGCTGCAGTTGTTCTCCAAAATGTTTAACCAGTCTTAA 2526 0.4026 MSFSIAHCHYPRNLPHASANKGTTLDHRSNKPASIVSLLQTPPHPVNRITKSNIQPVIDLLKSCEESGSLKQANCIHGHLLKSGFGDRESLVLMNHAVHAYSKCNDYNAACRLFNAMPQRNVFSWTVMIVASNEHGHYHNGLELFCMMLEHGVLPDGFAFSALLQSCVGLNSVELGQMVHAHVVVTGFLMHTVVGTSVLNMYAKLGESESSVKVFSTMPEVNIVSWNAMISGFTSNGLHLQAFDCFINMIEVGVTPNNFTLVSVSKAVGQLADIHKCHQVHKYASNWGLDSNTLVGTALIDMYSKCGSMFDAQTLFDKKFTSCLVNTPWNAMITGYSQAGSHIEALELFTRMCQNDIKPDIYTFCCVFNSIAALKCLKSLRETHGMTLKYGFDALQISATNALADAYAKCDSLEAVENVFNRMEDKDIVSWTTMVTAYCQYSEWGKALTIFSQMRNDGLVPNHFTLCSVITACGGLCLLEYDMISAVLVSKKFVCSGESGSGKTETAKIALQYSAAFGGDASFAVEKEFLQINRILEGFGNAKTSGNNNSSRFGKLICVANIQTSVTSAAQMMDCSSQELMAALCNKIQSDEDAIAKILTLRQEIERRDEIAKFIYASLFDWPLEQINESLQVGKQLTGQSRSILDIYGFQNCQVCSMHNVFTYVSKNVDYVLKVPCITFLEKQFYINYANERIQQHFNQHMFKLAQEDYELDGIDWTTVDFEDNEECLDLFEKLSDYVIFVAKCAETWSLLSLLDEESNLAKASGLTFANKLKHHLDANACFKGERGRAFGARHYARKVLYDTNDFLEKNRGMLSPDCIQFLSLCNCELLQLFSKMFNQS 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02345 841 Gene3D Myosin VI head, motor domain, U50 subdomain 531 659 - -
Pste3g02345 841 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 178 276 - -
Pste3g02345 841 NCBIfam pentatricopeptide repeat 429 462 IPR002885 -
Pste3g02345 841 NCBIfam pentatricopeptide repeat 224 257 IPR002885 -
Pste3g02345 841 NCBIfam pentatricopeptide repeat 329 361 IPR002885 -
Pste3g02345 841 Gene3D Tetratricopeptide repeat domain 272 389 IPR011990 GO:0005515
Pste3g02345 841 Gene3D Tetratricopeptide repeat domain 390 513 IPR011990 GO:0005515
Pste3g02345 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Pste3g02345 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Pste3g02345 841 SMART MYSc_2a 466 840 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste3g02345 841 Pfam Myosin head (motor domain) 684 835 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste3g02345 841 Pfam Myosin head (motor domain) 563 658 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste3g02345 841 Pfam Myosin head (motor domain) 492 559 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste3g02345 841 Gene3D - 682 841 - -
Pste3g02345 841 Pfam PPR repeat 95 122 IPR002885 -
Pste3g02345 841 Pfam PPR repeat 297 318 IPR002885 -
Pste3g02345 841 Pfam PPR repeat 196 221 IPR002885 -
Pste3g02345 841 Pfam PPR repeat 123 153 IPR002885 -
Pste3g02345 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 833 IPR027417 -
Pste3g02345 841 Gene3D Tetratricopeptide repeat domain 43 174 IPR011990 GO:0005515
Pste3g02345 841 Gene3D Tetratricopeptide repeat domain 175 271 IPR011990 GO:0005515
Pste3g02345 841 PANTHER OS07G0578800 PROTEIN-RELATED 57 182 IPR045215 GO:0003723|GO:0009451
Pste3g02345 841 FunFam Pentatricopeptide repeat-containing protein 327 481 - -
Pste3g02345 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Pste3g02345 841 Pfam PPR repeat family 329 370 IPR002885 -
Pste3g02345 841 Pfam PPR repeat family 222 264 IPR002885 -
Pste3g02345 841 Pfam PPR repeat family 426 473 IPR002885 -
Pste3g02345 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Pste3g02345 841 FunFam Uncharacterized protein 49 177 - -
Pste3g02345 841 PRINTS Myosin heavy chain signature 490 515 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste3g02345 841 PRINTS Myosin heavy chain signature 534 561 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pste3g02345 841 ProSiteProfiles Myosin motor domain profile. 486 841 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02345 Pste-Chr3 16639968 16645297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02345 565 841 Myosins gene family AT5G54280 55.914 3.54e-83 288