Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02343 TTTGGTTTCGGCAATGGTGCTACTCAGATGTTTCTCAGTAACACTTTTGCAGTGGTGTTTCTTGGCTTGCTTACTTTGCTTGTCCCTAGGGCTTACTAATAATCAAGCCCCATCTTGTGACCCTCACGATTTATCAGCTCTGAAGGAGTTTGCCAGCAACCTTACAAGTGGCTCTATCATCACAGAATGGTCCAATGACATTGTCTGCTGCAACTGGCGTGGAGTTGTTTGTGATAATGTCACTAATGGTGGTGGAACAGTTGCTAGTAGAGTGACCAAGTTGGTCCTGCCTGAAATGGGTCTCGGGGGCACAATTTCACCCTCTTTGGCACAACTAGATCAGCTCAATGTGCTAAATCTTTCATTCAACCACCTCAAGGGTGGATTACCTGTGGAATTCTCCCTGCTGAAGCAGTTGAAGTTCCTTGATGTGAGCCATAATATGCTGTCTGAACCTATTGCTGGGGCTCTTTCTGAAATTTGCAGTGCTTCCAAGGATCTTCACACGCTTGATTTGTCTGTAAATCATTTTGTTGGTGGTCTTGAAGGCTTGGATAACTGTACCTCATCTCTCCAACGGTTGCATTTGGATTCCAATTCATTTACTGGCCCTCTACCTGATTCCCTGTATTCAATGTCAGCCTTGGAGGAGCTCTCAGTCTCTGCCAACAATTTATCTGGCCAGTTAAGCAATCAACTAAGTAAGCTTTCTAATCTAAAAACTCTGATGCTTTCTAGGAACAGGTTTACTGGGGAACTCCCAAATGTGTTTGGGAACCTTTCGCAGCTAGAAGAATTAGAAGCACATGCCAATTCATTTTCTGGAATCTTGCCTTCTACCTTAGCTTTATGCTCTAAGTTGAGGGTGCTTGATCTTCAAAATAATTCATTGTCAGGGCTTATTAATCTTAATTTCACTGGCTTGTCTAATCTTCAATCACTTGATCTTGCTACTAATCATTTCATTGGACCCCTTCCAACTTCCCTGTCCTATTGCCGTCAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAACTGGTTTTGTCCCTGAAAACTATGCCAACCTCACTTCACTTTTGTTTGTATCCTTGTCAAACAACAGCATTGAAAATTTATCTGTGGCGCTGTCTGTTCTGCAGCAGTGCAAAAATCTCACCACCCTTATCCTCAGTAAGAATTTCCATGGTGAGGAAATTTCAGAAAGTGTAACAGTAGGATTTAAGAGCCTTATGATTTTAGCACTTGGAAATTGTGGTCTTAGAGGCCATATTCCTTCCTGGTTATCTAATTGCAGGAAGTTAGCGGTTCTTGACTTGTCTTGGAACCATTTGAGTGGTAGTGTTCCTTCTTGGATTGGTCAGATGGACAGCTTGTTCTATTTAGATTTCTCGAATAATTCTCTAACAGGAGAAATACCAAAAAAATTGACAGAGTTGAAGGGCCTCATGTGCGCAAACTGTAATAGAGCAAATCTTGCTGCATTTGCATTCATTCCTCTCTTTGTTAAGAGAAACACAAGTTCAAGTGGACTGCAATATAACCAGGCCTCAAGTTTCCCTCCTTCAATTCTCTTGAGCAATAACATGTTGAGTGGAAATATATGGTCCGAAATTGGTCAATTGAAAGCATTGCTTGTCTTGGATTTAAGCAGGAACAACATCACTGGTACCATTCCTAGCACTATTTCAGAGATGGAGAACTTGGAATCATTAGATTTATCTTATAATAATCTCTCTGGAGAAATTCCTCCATCATTTAACAACCTCACATTCTTGTCAAAGTTCAGTGTGGCATATAATCGGTTATCTGGACCTATCCCAACCGGGGGGCAATTTTTAAGCTTTCCTAGTTCAAGCTTTGAGGGAAACCAGGGGCTTTGTAGAGAAATCGATTTTCCTTGCAATATTGTCAACAATACAAGGCCCTTCATTTCTTCCAGTTCTTCCAGAAAACTTGGTAGAAGCAATGTCCTTGGCATAACAATCAGTATTGGGATAGGGCTTGCACTGCTTCTTGCAATTATTCTGCTAAGAATGTCAAAGAGGGATGACGATAAGCCTATTGATAACTTTGATGAGGAACTCAATAGCAGGCCACACAGGTTATCTGAAGCCCTTGTTTCCTCTAAGTTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTTACAGTTGCTGATCTGTTAAAATCCACAAACAATTTCAACCAGGCAAATATCATTGGTTGTGGTGGGTTTGGTCTTGTCTACAAGGCATATCTTCCAAATGGCTCAAAAGCAGCTATCAAGAGACTTTCAGGGGACTGTGGTCAAATGGAACGTGAATTTCAAGCTGAAGTAGAGGCCCTCTCTAGAGCCCAACACAAGAACCTTGTTTCTCTGAAAGGATATTGTCGGCATGGCAATGACAGGTTGCTAATATACTCATACTTGGAGAATGGAAGCTTAGATTATTGGCTGCATGAGTGTGTGGATGAAAATTCAGCTCTCAAATGGGATGCAAGGCTCAAGATTGCACAAGGTGCTGCTCGTGGATTAGCTTACCTGCATAAGGGGTGTGAACCTTTCATAGTGCATCGAGATGTTAAATCTAGCAACATACTTTTGGATGACAAGTTTGAAGCTCATTTGGCTGATTTTGGTCTCTCAAGGCTACTTCAACCGTACGACACTCATGTTACTACTGACTTGGTAGGAACTTTAGGATATATTCCTCCAGAATATAGTCAGACACTGACAGCAACCTTCAGGGGTGATGTTTATAGTTTCGGTGTTGTTCTTCTTGAACTTCTTACTAGTAGAAGGCCTGTGGAAGTCATCAAGGGGAAAAATTGCAGAAATCTGGTGTCTTGGGTCTTTCAGATGAAATATGAGAACAAGGAGCAGGAAATTTTTGATCCTGCAATTTGGCAGAAGGATCATGAGAAACAGCTATTGGAGGTGCTTGCCATTGCTTGTAAATGTCTAAACCAAGATCCTAGGCAGAGACCCTCTATTGAAGCAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGTTATCAACAGTGTTCT 3052 0.4138 MVLLRCFSVTLLQWCFLACLLCLSLGLTNNQAPSCDPHDLSALKEFASNLTSGSIITEWSNDIVCCNWRGVVCDNVTNGGGTVASRVTKLVLPEMGLGGTISPSLAQLDQLNVLNLSFNHLKGGLPVEFSLLKQLKFLDVSHNMLSEPIAGALSEICSASKDLHTLDLSVNHFVGGLEGLDNCTSSLQRLHLDSNSFTGPLPDSLYSMSALEELSVSANNLSGQLSNQLSKLSNLKTLMLSRNRFTGELPNVFGNLSQLEELEAHANSFSGILPSTLALCSKLRVLDLQNNSLSGLINLNFTGLSNLQSLDLATNHFIGPLPTSLSYCRQLKVLSLARNGLTGFVPENYANLTSLLFVSLSNNSIENLSVALSVLQQCKNLTTLILSKNFHGEEISESVTVGFKSLMILALGNCGLRGHIPSWLSNCRKLAVLDLSWNHLSGSVPSWIGQMDSLFYLDFSNNSLTGEIPKKLTELKGLMCANCNRANLAAFAFIPLFVKRNTSSSGLQYNQASSFPPSILLSNNMLSGNIWSEIGQLKALLVLDLSRNNITGTIPSTISEMENLESLDLSYNNLSGEIPPSFNNLTFLSKFSVAYNRLSGPIPTGGQFLSFPSSSFEGNQGLCREIDFPCNIVNNTRPFISSSSSRKLGRSNVLGITISIGIGLALLLAIILLRMSKRDDDKPIDNFDEELNSRPHRLSEALVSSKLVLFQNSDCKDLTVADLLKSTNNFNQANIIGCGGFGLVYKAYLPNGSKAAIKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYLENGSLDYWLHECVDENSALKWDARLKIAQGAARGLAYLHKGCEPFIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTSRRPVEVIKGKNCRNLVSWVFQMKYENKEQEIFDPAIWQKDHEKQLLEVLAIACKCLNQDPRQRPSIEAVVSWLDSVRFDGYQQCS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02343 1013 FunFam Leucine-rich repeat receptor-like protein kinase 806 1011 - -
Pste3g02343 1013 FunFam Tyrosine-sulfated glycopeptide receptor 1 301 635 - -
Pste3g02343 1013 SUPERFAMILY L domain-like 274 616 - -
Pste3g02343 1013 FunFam Leucine-rich repeat receptor-like kinase 38 158 - -
Pste3g02343 1013 SMART LRR_typ_2 280 303 IPR003591 -
Pste3g02343 1013 SMART LRR_typ_2 537 560 IPR003591 -
Pste3g02343 1013 SMART LRR_typ_2 256 279 IPR003591 -
Pste3g02343 1013 SMART LRR_typ_2 304 328 IPR003591 -
Pste3g02343 1013 SMART LRR_typ_2 352 375 IPR003591 -
Pste3g02343 1013 SMART LRR_typ_2 451 475 IPR003591 -
Pste3g02343 1013 SMART LRR_typ_2 208 231 IPR003591 -
Pste3g02343 1013 SMART LRR_typ_2 132 155 IPR003591 -
Pste3g02343 1013 SMART LRR_typ_2 232 255 IPR003591 -
Pste3g02343 1013 SMART LRR_typ_2 561 584 IPR003591 -
Pste3g02343 1013 SMART LRR_typ_2 108 131 IPR003591 -
Pste3g02343 1013 Pfam Protein kinase domain 731 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g02343 1013 FunFam Phytosulfokine receptor 1 693 805 - -
Pste3g02343 1013 Gene3D Ribonuclease Inhibitor 36 183 IPR032675 -
Pste3g02343 1013 SMART serkin_6 730 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g02343 1013 ProSitePatterns Protein kinases ATP-binding region signature. 736 758 IPR017441 GO:0005524
Pste3g02343 1013 SUPERFAMILY Protein kinase-like (PK-like) 712 1001 IPR011009 -
Pste3g02343 1013 ProSiteProfiles Leucine-rich repeat profile. 282 303 IPR001611 GO:0005515
Pste3g02343 1013 SUPERFAMILY L domain-like 59 390 - -
Pste3g02343 1013 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 405 1004 - -
Pste3g02343 1013 SMART LRR_sd22_2 280 301 - -
Pste3g02343 1013 SMART LRR_sd22_2 352 370 - -
Pste3g02343 1013 SMART LRR_sd22_2 208 237 - -
Pste3g02343 1013 SMART LRR_sd22_2 451 477 - -
Pste3g02343 1013 SMART LRR_sd22_2 561 587 - -
Pste3g02343 1013 SMART LRR_sd22_2 132 151 - -
Pste3g02343 1013 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 202 297 - -
Pste3g02343 1013 PRINTS Leucine-rich repeat signature 561 574 - -
Pste3g02343 1013 PRINTS Leucine-rich repeat signature 283 296 - -
Pste3g02343 1013 CDD STKc_IRAK 736 1002 - -
Pste3g02343 1013 Gene3D Phosphorylase Kinase; domain 1 693 805 - -
Pste3g02343 1013 Gene3D Ribonuclease Inhibitor 301 636 IPR032675 -
Pste3g02343 1013 Gene3D Transferase(Phosphotransferase) domain 1 806 1009 - -
Pste3g02343 1013 Pfam Leucine rich repeat 186 245 IPR001611 GO:0005515
Pste3g02343 1013 Pfam Leucine rich repeat 541 598 IPR001611 GO:0005515
Pste3g02343 1013 Pfam Leucine rich repeat 405 464 IPR001611 GO:0005515
Pste3g02343 1013 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
Pste3g02343 1013 Pfam Leucine Rich Repeat 282 304 IPR001611 GO:0005515
Pste3g02343 1013 Gene3D Ribonuclease Inhibitor 184 300 IPR032675 -
Pste3g02343 1013 ProSiteProfiles Leucine-rich repeat profile. 563 585 IPR001611 GO:0005515
Pste3g02343 1013 ProSiteProfiles Protein kinase domain profile. 730 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g02343 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 852 864 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02343 Pste-Chr3 16616326 16619509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02343 157 605 Receptor kinase-like Gene Family AT1G55610 29.193 3.15e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Pste3g02343 Pkinase 6.5e-45 CL0016