Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02338 ATTAAAAGCAAGGGAACAGATAGACTTTTGATTTAAAATCCAGCACACAAGTACCTCTGGCACCGTGCATCTCAGATAACCAAATATTTTAGTGATACAACTAACTGAGAGAGCAGACCTAGCTAAACGCTGTGTTTAAGTATGTTACTCCTAGTAACTGCCGTATTGGGAGTGAACAATAAGAGCACTTGTTAATTTCCTAAGGTTAGTTGTGAATTGTGGTGCAGTTAAAATGGACTTAACATGATTTTCGATTCCAAAGTTCCAATTGGAAAATTTCTCTTCACATCAAGCCTTCAGCTTCAAAGTCCAAATTAGCTCTGCTGGTACTATCTTTCTGATTCTGTTGTTTTAATCATGCTGATTTTGCATGAAGTCATTAGTCATATCATATATATCTTTCTGTAATACAGTATTTGAAGATGGCCGTGCATGTGATATGGGTCCTTCACCTGCGTATCAGAAATCACATCAACGAACAAAAGGGAAAATCCTACTCTTCCAAATTGTGACTCTTTAAGCACCATTAGATTAGCATTTACCACAAAGGAACCTAGAGTTATTTGACAGCACTTTCACTTTCAACACACCGTTCATGCAAAATCAATCCCCACTTGCCACTCACTACAAGAATTGATATTTAAACTTTGCTTTATTTGCTTCATTACAGACAAAACATATCTCCATGCATTACTTCGCGACCCTATGCACCAAAGCACACAACTAACAAATTGGAGCCTGTGGTCCATACCCCTTCCCCCTTCTTTCTCCACCTTTTTGGCTCCCTATAAACTCCCTCTTTCAGTCACAGTGCTCCAAAGACAAGACTCTAATTGTTTTCTTGCTCCAGCATTTTTTCCTTCTTCTTCTTCTTCATCATCATCATCATTGTTAGCACTCACAATGGAGATCAAGAGTAGAGAGAGGAAGCAAGTGTCAATTGAGAAGGTGAGGAGAGACAGCACAGTTGAAGTAGAGGATGAAGAGGAAGAGGAAGAGGAAAGTGTGGTTGGTGGTGAGGGTGCTCTTGCAGAAGACGAGAGGAAGAAAGGTGGTGGAGGTAGCGGGAGAAGAGGGTCAAGTGGGGGTGGAGGAGTTTCTCCACCTTCTTGTCAGGCAGAGATGTGTGGTGTTGATTTGACTTTTGCAAAGAGGTATCATCGCCGCCATAAGGTTTGTGAGTTTCATTCCAAGGCAACTTTTGTTATGGTTGCAGGACTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGATGAAGCTAAAAGAAGCTGCAGGAGACGCTTGGCCAGACACAATGAGCGGCGCCGAAAAAGCAATGTTGAAACTTGCAATGAAGGGTGCAGTGGCAGCAAAGGGCAGCACCCTACTGAAAGCCAATGCAGAAATACTGATGACTGGGCAAGAATTCAGATGACCATGACAAGGAGTTCTGGTTACAAATCCTTCCATATCAAATGAATCACGAATCCAATGTGTTTAGCTGTTATTTAGCATGCTCCCTCTCTTCTGTCAATGGATCTTTAAAGTTTTCATGCCAAGGCATATAATAAAACACCCCTTTTTATGTTACGAGAATAAGCATCTAAACCAGAATGAAAAATTCTCAACATCTAAAGGTGCTGTCGTAAGTAAACTAGTCCATTCTCTGAAGATCTATATATTATTTACTTAGCCAGTGTCTTCTGTTTCTGTGTACCTTTGAATATAAGTATTCTATTGTACCACCCTTAAAATGGTGTACCCCTATTTCTCCTTTATTAGAATAAAATCTATTGCTTATTTGAC 1806 0.4059 MHQSTQLTNWSLWSIPLPPSFSTFLAPYKLPLSVTVLQRQDSNCFLAPAFFPSSSSSSSSSLLALTMEIKSRERKQVSIEKVRRDSTVEVEDEEEEEEESVVGGEGALAEDERKKGGGGSGRRGSSGGGGVSPPSCQAEMCGVDLTFAKRYHRRHKVCEFHSKATFVMVAGLRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNVETCNEGCSGSKGQHPTESQCRNTDDWARIQMTMTRSSGYKSFHIK 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02338 257 ProSiteProfiles Zinc finger SBP-type profile. 133 210 IPR004333 GO:0003677
Pste3g02338 257 MobiDBLite consensus disorder prediction 89 105 - -
Pste3g02338 257 MobiDBLite consensus disorder prediction 212 233 - -
Pste3g02338 257 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 54 211 IPR044817 GO:0003677
Pste3g02338 257 MobiDBLite consensus disorder prediction 214 233 - -
Pste3g02338 257 Pfam SBP domain 136 209 IPR004333 GO:0003677
Pste3g02338 257 Coils Coil 186 206 - -
Pste3g02338 257 FunFam Squamosa promoter-binding-like protein 14 128 197 - -
Pste3g02338 257 Gene3D - 127 197 IPR036893 GO:0003677|GO:0005634
Pste3g02338 257 SUPERFAMILY SBT domain 134 214 IPR036893 GO:0003677|GO:0005634
Pste3g02338 257 MobiDBLite consensus disorder prediction 76 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02338 Pste-Chr3 16576275 16578750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02338 66 225 SBP-box Gene Family AT3G60030 46.471 1.73e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste3g02338 SBP 1.4e-30 No_clan