Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02328 TTCAATATCTCTCATGAAACCACTTTCTGTTCCCTTTCTTACAATTTCTTCACTGACAAAGGAATACCTGCACATTTCCTCACGCACGCACGCATACTCAATCGCCACTCCCTCGTACATCACCCTCTCTCTCTCTTTCTCTCTCTCTCTCTAGCTATGTGGATCATGATGAGGACCCTGTCAGAGAGTAGAGAGAGCTATCAGAAGAGGATAGTGCAGAGAAAACACAGATTTTTCCAGCCATATCATACCTTATTATTTCACCTTTTTCTCTCTGCCACCCGATTCATCAAATCCCATGAGACCACCCCTTATAAACCACCCCCTCATATCCAATCCCAAACCAAACCACACCCACCAAATGTTCCTCCTTTCTTCTTTCCAATGGACTCTTACCACCACTTGGACCACACTGAAGCTCACCTGCCACCTGGCTTTCGGTTCCATCCTACTGATGAGGAGCTCATAACGTACTACCTTCTCAAAAAGGTTCTAGACAGCACCTTCACTGGTAGAGCCATAGCTGAGGTTGACCTTAACAAGAGTGAGCCATGGGAGCTTCCTGAGAAAGCTAAAATGGGTGAAAAAGAGTGGTACTTCTTCAGCTTACGTGACAGGAAGTACCCAACTGGATTAAGGACCAATAGGGCTACTGAAGCTGGTTACTGGAAAGCCACTGGCAAAGATAGAGAGATTTATAGTTCCAAGACTTGCTCTTTGGTGGGGATGAAGAAAACCTTGGTTTTCTACCGTGGAAGAGCTCCAAAGGGAGAGAAAAGCAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCACTACCTTTCTCGCAACTCCAAGGATGAGTGGGTCATATCACGGGTGTTCCAGAAGAGTAATACTTCTAATGGAGGCTCAACCATGTCTGCTTCAAGTAACTCCAAGAAGACAAGAATGAACAGCACAACCAGTCTCTGCCATGAACCAAGTTCACCCTCTTCAGTGTTCCTTCCACCACTTCTAGACTCTTCTCCCTACACCACTGCCTTCACCGACCGTCACAATGGTTCGTATGACAGCACCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACAATAGCAGCAGCCACAGCTGCTGTTGTCTCCCCCAACAACTTCGGCGATGCAAGCTTCGACCTTCCGTCTTCCCAGCCTCTTACTACGGACCCCTTTGCACGGTTTCAGAGAAACATTGGTGTTTCTGCATTTCCTAGTTTGAGGTCTCTGCAAGACAACCTTCAGCTACCTTTCTTTTTCTCTCCGGCGGCTCAGACCTTCTCCGGCGCTCTCTCCGGCGACTTTCTTAACTGGCCAATGCCGGAGGATCAGAGACTGGTGGATGGTGGCTCTAACTTGCCACTGGGGGTGTCGGAGCTTGATTGCATGTGGGGGCTAGTTAATGTAAAAGTAGTTTGGTATGTGGTGTTTATTTATGCTATGGTCCACTTGGGATTTATGTCTTTGGAAGTGGTTGCACTGTCTGACGTGTTGATCTTCAAAAGCTCTCTCTTCTATGGACCGTTGAAGGATTTGTCTTTGCAAATGTTTCCGTTTTCT 1584 0.471 FNISHETTFCSLSYNFFTDKGIPAHFLTHARILNRHSLVHHPLSLFLSLSLAMWIMMRTLSESRESYQKRIVQRKHRFFQPYHTLLFHLFLSATRFIKSHETTPYKPPPHIQSQTKPHPPNVPPFFFPMDSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTSNGGSTMSASSNSKKTRMNSTTSLCHEPSSPSSVFLPPLLDSSPYTTAFTDRHNGSYDSTTKKEHVSCFSTIAAATAAVVSPNNFGDASFDLPSSQPLTTDPFARFQRNIGVSAFPSLRSLQDNLQLPFFFSPAAQTFSGALSGDFLNWPMPEDQRLVDGGSNLPLGVSELDCMWGLVNVKVVWYVVFIYAMVHLGFMSLEVVALSDVLIFKSSLFYGPLKDLSLQMFPFS 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02328 528 Pfam No apical meristem (NAM) protein 143 269 IPR003441 GO:0003677|GO:0006355
Pste3g02328 528 MobiDBLite consensus disorder prediction 297 328 - -
Pste3g02328 528 Gene3D NAC domain 151 299 IPR036093 GO:0003677|GO:0006355
Pste3g02328 528 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 140 341 - -
Pste3g02328 528 SUPERFAMILY NAC domain 137 294 IPR036093 GO:0003677|GO:0006355
Pste3g02328 528 ProSiteProfiles NAC domain profile. 142 294 IPR003441 GO:0003677|GO:0006355
Pste3g02328 528 FunFam NAC domain-containing protein 100-like 151 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02328 Pste-Chr3 16483074 16485902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02328 132 472 NAC Transcription Factor Family AT5G53950 53.316 1.24e-114 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g02328 NAM 5e-40 No_clan