Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02306 ATTCAGAAATGGATGAACAAAGACAAGACAATCATAATTCTGAACCTTGTATCCCTGTAAGAGGAATCACCACCAACTTGCAACCTAATAACATCCATGCAATAGCCCGAGTTTCTGGGAACACAACTAATGTTGATTCTCACTTTCTACCAGATGATTATGATAATGCTAGGGTGCATGAGATTACACAATACAATGACATTCATCACCCACAAAATATTGATACAAGTGTACCAGCTACAACCAACTTATATTATTCCAGCATTAATGCTTCTACTAGTACGGGTGTTTTCCCTTTGCCTCCAAATAATAGACCCTTTGATCAATTGCCAAGTTCAAGCACATTTGCAATTGCTAGTGTTTCTTCATATCATTTTAGGACAAGTTCTGGTTTTATTGATAATGTTAGAGGTCCGTACAAAAGGAAATCCACTGAAGGGATTAGAGGAAGTTACCAGTATTTTAATGCTTCATCTAGTTCTTCAATTGCTCCCCCTAATGCAAGACACACCGATGGAGTAGCTATGATGGATAATACACCATTTTCATTCCATGTACCTTCATTTGTGGAAGTAGGACCTCATGGTAGTGCCTGGAATAGGGCAAATGAGTCTATTATGGTGCATAACCATAATCATTTGATTCATGGAAACTATTTAGGGCAACATTTTCAGCCAGCTCCTCCTCCCTGGTTGGACCAACAATTGAGTAGTAACAATAATGATGGTCATACTACTACTCCCTGGACTCCATCTTTTTCAATACCTTATGTACAAGCACCTAATGTAAATGGAAGTTCATTAGAGAATGGAAGTATGGGTTTGCAAAGATATCATAATCCAACTGGAAATCGAAATGACCACAGGTTTCCTCATCCTCTTCATGTCAATCAACAACACTATAATTATCATCATCCAACACTACCTATGCAAGGAGTAAGAGGTCACGATATCAATTTTCACCCTGCAGCTACAACACCTTCATTTAGAGTTCCAACAAGTCCTTTACGCAATGTTGCAATGCCAACGCAACCTGATTTTGAGATGGGTCCTAGGCATGCTAGCCTTACATCGTCCACTGGCCTTCGAATTTATCGACCTCATAGAGGGCTCATGCCTGAAACAACTCTTGGACATCAAAGTCTTCCCCCTATTGGCTTCATGCAAGTTGATAATGTCGCATTGATTAATGAAGTGGGAAATTTGGTTGACCATCATAGAGATATGCGTTTGGACATAGAGGATATGTCATATGAGGATCTCCTAGCACTGGGTGAACGAATTGGCAATGTAAGTACTGGTTTAACAGAAGAAATAATTAGGAATCAATTGAAGACAAAAACTTATTTATATCATGCTACTAGCATTCATACGGAGGAGGAAGCTTGTGATAATCACGGAGTAGATTCTTGTATAATATGCCAGGATGAATTCAAAAGTCAAGAGAGAATTGGAGTTCTTCGATGTGAGCATGAGTATCATGAAGATTGCTTAAGGAAATGGTTGGTTGTAAAAAATGTTTGCCCAATATGCAAATTGGAAGCTTTGTCTCCTGAAATAAGGGGTGTA 1568 0.3884 MDEQRQDNHNSEPCIPVRGITTNLQPNNIHAIARVSGNTTNVDSHFLPDDYDNARVHEITQYNDIHHPQNIDTSVPATTNLYYSSINASTSTGVFPLPPNNRPFDQLPSSSTFAIASVSSYHFRTSSGFIDNVRGPYKRKSTEGIRGSYQYFNASSSSSIAPPNARHTDGVAMMDNTPFSFHVPSFVEVGPHGSAWNRANESIMVHNHNHLIHGNYLGQHFQPAPPPWLDQQLSSNNNDGHTTTPWTPSFSIPYVQAPNVNGSSLENGSMGLQRYHNPTGNRNDHRFPHPLHVNQQHYNYHHPTLPMQGVRGHDINFHPAATTPSFRVPTSPLRNVAMPTQPDFEMGPRHASLTSSTGLRIYRPHRGLMPETTLGHQSLPPIGFMQVDNVALINEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLTEEIIRNQLKTKTYLYHATSIHTEEEACDNHGVDSCIICQDEFKSQERIGVLRCEHEYHEDCLRKWLVVKNVCPICKLEALSPEIRGV 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02306 520 SMART ring_2 468 508 IPR001841 -
Pste3g02306 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 133 514 IPR045191 GO:0061630
Pste3g02306 520 SUPERFAMILY RING/U-box 453 512 - -
Pste3g02306 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 431 513 IPR013083 -
Pste3g02306 520 CDD RING-H2_RNF24-like 466 509 - -
Pste3g02306 520 Pfam Ring finger domain 466 509 IPR001841 -
Pste3g02306 520 ProSiteProfiles Zinc finger RING-type profile. 468 509 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02306 Pste-Chr3 16305624 16307858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02306 401 513 C3H Transcription Factor Family AT2G15530 51.327 2.17e-34 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02306 3 16305624 16307858 Pste3g02306 3 16305624 16307858 ECH