Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02293 ACTTGATTTGAGCTTTGTAGGCTTATCGCGCAGTTCCGCCTCACTCACAGTGAAACTCCGAGAATGATAAACAATGGAGTGTGCACTCTCCGCACGTGCCTCCGGTTCCCCGAGAAACCCATTTTCCGGCTACCACCGTGGTCGTTCAGTTGTCGGCGGCGGCGGTTTCTGGTGACTGCTTCCGAAACGAAGAAGAAAGAGAAGGTGATTGTGATTTCTGGACCCACAGGTTCCGGCAAGAGCCGCCTCGCATTGGAACTCGCGAAACGCCTCAACGGCGAAATCGTTAGCGCCGACTCTGTCCAGGTGTATCGCGGTCTTGATGTTGGATCTGCAAAGCCTTCCCCAAATGAAAGGAAGGAGGTACCACATCATCTGGTTGATATACTGCACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCTATCTACAAGATGTATTCTTGACAATGGCCGTGTTCCTATAGTTGTTGGAGGCACCGGATTGTTCATATATGGAAAGCCAGATGTACCTAAAGCCTCTCCAGAGATTACATCTGAAGTATATCTAGAGTTAGCTGAACTACAGAGGAATGAAGACTGGGATGCAGCTGTGCAGTTGGTGGTAAAAGCAGGTGATCCAAAGGCTCAATTTCTAACAGTGAATGATTGGTACCGATTACGGCGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCGGCTTTTCGGGTACCATATGATTCTTTCAGGGAACAGGGTGAATGTAGTGTTGCTGATGGTTCTGAGTCATCTGATATAAGTGCTCATGATGATGCAATGGAAGAAACCAACTCATCAGACTTAGACTACGAGTTTATGTGCTTTTTCCTTTCTAGCCATAGACTTAACCTTTATAAATCAATTGATTACCGGTGTGAAGATATGCTATTAGAAAAATCAAAATTCTTCTGTGTGTATGCATGGGCACTACATATTCCTGTTTGTATTTGCTGTTTATACATGCTGAGCTGTCTGTCACTAGTACATGAATATTTAATTGCGATAAATCTCCCAGTTCTCTCTTTGACTGCAGGAAGGGATGGGATTTTATCTGAGGCACAATGGCTTCTTGATACGGGTCTTCATCCAAACTCCAATTCTGCAACAAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCAAGGTGGTCAGAGCTCTGTTAGAGAGTTTTACCAATTCTTGTCTGAATTTCAAAGAGCATCACGGAATTTCGCAAAGAGGCAGTTGACATGGTTTCGTAATGAAAATATATACCAGTGGCTTGATGCTTCTAAACCTCAGGAATCCATTCTCAACTTTATTCATGGTGCATACAATGATTGGAATGGAAGTCTTCTTGTGCCTGCACACCTAAGAATGTCCAGAGATATTTCTAATCACCGAGAAGCTACACAACTGAAGTCTTACCGCACCAAAAATAGAATACTA 1485 0.4384 MINNGVCTLRTCLRFPEKPIFRLPPWSFSCRRRRFLVTASETKKKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSPNERKEVPHHLVDILHPSEDYSVGQFFEDARLSTRCILDNGRVPIVVGGTGLFIYGKPDVPKASPEITSEVYLELAELQRNEDWDAAVQLVVKAGDPKAQFLTVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQGECSVADGSESSDISAHDDAMEETNSSDLDYEFMCFFLSSHRLNLYKSIDYRCEDMLLEKSKFFCVYAWALHIPVCICCLYMLSCLSLVHEYLIAINLPVLSLTAGRDGILSEAQWLLDTGLHPNSNSATKAIGYRQAMEYLQRCREQGGQSSVREFYQFLSEFQRASRNFAKRQLTWFRNENIYQWLDASKPQESILNFIHGAYNDWNGSLLVPAHLRMSRDISNHREATQLKSYRTKNRIL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02293 474 Hamap tRNA dimethylallyltransferase [miaA]. 48 430 IPR018022 GO:0008033
Pste3g02293 474 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 45 423 IPR039657 -
Pste3g02293 474 Pfam IPP transferase 339 413 - -
Pste3g02293 474 Pfam IPP transferase 81 288 - -
Pste3g02293 474 FunFam tRNA dimethylallyltransferase 9 152 223 - -
Pste3g02293 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 177 IPR027417 -
Pste3g02293 474 Gene3D - 154 223 - -
Pste3g02293 474 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 48 221 IPR018022 GO:0008033
Pste3g02293 474 Gene3D - 45 473 IPR027417 -
Pste3g02293 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 433 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02293 Pste-Chr3 16081914 16089948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02293 51 148 C2H2 Transcription Factor Family AT2G27760 39.796 1.70e-16 79.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02293 3 16081914 16089948 Pste3g02293 3 16081914 16089948 ECH