Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02253 GAAAACCTAGAGCTAGAGGCGCTGTTGGAAGGAGCTGCAACGTTCATCATGGACGACAAGTTAGAGACTGCAGACAAAAAGGTGCTGGTTGATATTGTAAAATTAGCCCAAAAAAGAGGCCTGAAGGGTGACTTGGGAGGCTGGAAAGAATTCTTGAACAGTCATGACAAAAAGTTTGGGGCAGGATTGAGTGATCCATCAAAGAGATCCCATGAAATATTGGTTGCATTTCTAAAGACATTTTCAAAGGGGGAAGATTTGAAGTTTTTTGATAACATCATGCGACATCATTTAAATCAATACACTTTGGAGCGACTAAAAGATAAATCTCATGATTCCCCTGAACAGCAGAGGCTAGTCCAACTAACACTGCAGCATCCATTATATCCATTGGATTATTCATTCCAATCAATTGATGAGGGATGGATAGTTGTAAACCTTAAAAACAAACCGAAGGTTATGAACTCTACTGCAATGGTTGCTGTTGATTGTGAGATGGTTCTCTGTGAAGATGGGACTGATGCAGTAGTTAAAGTCTGTGTGGTAGACCATAATTTAGAGGTCAAATTAAATGAACTTGTAAAACCCGACAAAGAAATTGTAGACTACAGAACAGATATCACTGGTGTCTCTTCTCAAGATCTAGAGTCAGTGACATGCTCCTTGGCTGATATACAGAAATCCATGAAGAAGTTGTTATCAAATGGAACCATATTGGTGGGACACAGTTTGCATAATGATCTATGTGTGCTGAAGCTTGATCATGTCAGAGTGGTTGACACTTCATATATCTTCCAATCATTGAATGGATCTATTCACAGGAGACCTTCTTTGAATAGTTTATGTCAGGCAATGCTTGTTTATGCTGTGTTGGGCTGTGAAGTTCGGGAAAAGGGTGCTCCACATGATTGTCTAGATGATGCATGTGCAGCTATGAAACTTGCTCTTGCGAAGATCAAACATGGAGTTGATAGAGAATTTCCAATTCCATTGGTTCAAGAGCATGTTCCAGAAAGTGAGATGGCAAAGTTACTTCTTCACAGGATACCAAAAACTGTAAATGTGGAAACACTGCATAAAATTGTCCCCGGAAACTTCAAAATAGAACTGAAGCCTTCCAGGAAAGGTCAAGGAGAAAATTATTCTGCCTTAGCTGTTTTTAAAACTCCACAAGAGGCAGATGATGCCTATGAAAATGTCCGAGGAAGTCAATTAAAGGATACGTATGGACGTCCTCAGAAAAATGTAACATTTCGGCTAAACACAGGCATGTCTGTTAATCTATTTGTTCGGAAAATGGCAAGTGATGAACCCAATGGCTCAATTCCATTTAAGAGGGCTTTACAAATTGATGAGGCAGTTGATGTTTCCAAGAAAGCAAAGATGGATTCAAAAATTGAAGAGGATGTCCTGACAGGCTCTGGCAAGTGTAACACTGATGGTCGTTTGAATGAGATTGAAGCTCTGAATCAACAATTGAAGCAAAGGGAATTGGAGATTGAATCATTGAAGAATCAGTTGACACAAAAGGATTTTGAAATATCCATGCTGCATAAAATGGTATCTTCCTTAAAAAAGCGAAAGAAGGAAAAAATGTAGCCATGACATGGAATGGTCGATTGTGTTGTCAGATAAATTCAAGGATATGCTCCTCAGCTGAGGTCTTATAAAGTTAATGGTAATTTCTTGAAAATCGCATGGAGAGCCTGGACTTTTGATATGACCTTAGTCATGATAACTGCCGAGATTTCAAAACTTGTGTTATGTCATTCCAAATTAAATTTGGAATTAAAATTTTGTCTCCTGAAAGATTACTCTTTTTTATTACTAATATTAATATTTTCATTACTGCAATTATATGTTCTATTGACATATTCTGGTAGGCGGAAG 1890 0.3815 MDDKLETADKKVLVDIVKLAQKRGLKGDLGGWKEFLNSHDKKFGAGLSDPSKRSHEILVAFLKTFSKGEDLKFFDNIMRHHLNQYTLERLKDKSHDSPEQQRLVQLTLQHPLYPLDYSFQSIDEGWIVVNLKNKPKVMNSTAMVAVDCEMVLCEDGTDAVVKVCVVDHNLEVKLNELVKPDKEIVDYRTDITGVSSQDLESVTCSLADIQKSMKKLLSNGTILVGHSLHNDLCVLKLDHVRVVDTSYIFQSLNGSIHRRPSLNSLCQAMLVYAVLGCEVREKGAPHDCLDDACAAMKLALAKIKHGVDREFPIPLVQEHVPESEMAKLLLHRIPKTVNVETLHKIVPGNFKIELKPSRKGQGENYSALAVFKTPQEADDAYENVRGSQLKDTYGRPQKNVTFRLNTGMSVNLFVRKMASDEPNGSIPFKRALQIDEAVDVSKKAKMDSKIEEDVLTGSGKCNTDGRLNEIEALNQQLKQRELEIESLKNQLTQKDFEISMLHKMVSSLKKRKKEKM 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02253 516 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 312 IPR047021 GO:0004527
Pste3g02253 516 Gene3D - 138 311 IPR036397 GO:0003676
Pste3g02253 516 FunFam Small RNA degrading nuclease 3 138 317 - -
Pste3g02253 516 SUPERFAMILY Ribonuclease H-like 143 304 IPR012337 -
Pste3g02253 516 Coils Coil 467 497 - -
Pste3g02253 516 Pfam Exonuclease 144 298 IPR013520 -
Pste3g02253 516 SMART exoiiiendus 142 308 IPR013520 -
Pste3g02253 516 CDD REX1_like 144 300 IPR034922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02253 Pste-Chr3 15803718 15809075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02253 96 274 C2H2 Transcription Factor Family AT3G27970 27.094 2.81e-09 57.0