Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02249 TTCTCTCTGTTAAAACAAACAAAACAAACACGCCCTTGTTTCTCTCTCTTCCCCTTTGTTTCTCTCTCTACAAATTTCTTCTTCTTATGAGCCCTAACTCGCGGTCCCATCATCGTCGTCACTAGCCATGTCGCTGAGGAAGGTCTTCCGCTCCCGCAAGTTCTCCAGATCGTTCAAGGAGGCGCTGCCGGCGGATGCCGGAGCGGTCGGCGGCGATGGTGGGGTCGCCGGCGCCGGTGAAGACGCGGCCAATGTGAATGGCGGCTGGTCCAACATGCTGCCGGAGATCCTCGGCGAGATCGTGCGCCGCGTGGACGCCGCCGAGGACCAGTGGCCCAGCCGCCAGGATGTCGTCGCCTGCGCCTGCGTCTGCAAGCGTTGGCGTGACATCACGCGCGAGATCGTGCGTGAGCCTTACCACCCCGGCAAAATCACTTTCCCTTCATGCCTTAAACAGCCAGGACCACGTGACGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACGTTTTATCTATATCTTGCCCTTACACCATCATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCCAGGAGATATAGGTGTGGTACCCATACCGAGTATATAATTTCACTTGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATATTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGAAGGGCCAGCCGTCGGTTTGCCAGCAAGCAGATAAGCCCGCAAGTACCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGAATGATATGCTCCTTGAAGTGTCCTGTGACTCCTGTCCCATCAGCAGGTGAAAGTGTGGATAGCACACCGCTGGATGGCCTTAAGATGCACGATAAAGAACAAGCTGCTTCTGGCTACACAATCTTGAAGAATAAAGCTCCAAGGTGGCATGAACATTTGCAATGTTGGTGCTTAAATTTCCATGGTCGAGTGACGGTGGCCTCAGTGAAGAACTTTCAACTGGTTGCAACTGTGGACCAAAGTCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTCCTCCAATTTGGTAAAGTAGGGGATGATACTTTTACCATGGATTATAGACAGCCCTTATCTGCTTTCCAGGCTTTTGCTATTTGCTTAACTAGCTTTGGCACCAAACTTGCTTGTGAGTAATATAATTTTGGTGTCACTGTGCTTATTTATTCCGTGGATGTCTACAATTTGATTGCAGGAAGCTTCTTGTTGTAAATGTTATATCATCAATAGAACATCACATCTTCCATAATCAAATATATTGCTCTATTCACTGGGTTGGTCCATCATAGATTTTGTT 1427 0.4863 MSLRKVFRSRKFSRSFKEALPADAGAVGGDGGVAGAGEDAANVNGGWSNMLPEILGEIVRRVDAAEDQWPSRQDVVACACVCKRWRDITREIVREPYHPGKITFPSCLKQPGPRDVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYIGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVTPVPSAGESVDSTPLDGLKMHDKEQAASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02249 379 SUPERFAMILY Tubby C-terminal domain-like 98 379 IPR025659 -
Pste3g02249 379 ProSitePatterns Tub family signature 2. 364 379 IPR018066 -
Pste3g02249 379 Gene3D - 47 92 - -
Pste3g02249 379 CDD F-box_AtTLP-like 47 91 - -
Pste3g02249 379 Gene3D Tubby Protein; Chain A 103 379 IPR025659 -
Pste3g02249 379 Pfam F-box domain 47 93 IPR001810 GO:0005515
Pste3g02249 379 SUPERFAMILY F-box domain 47 91 IPR036047 GO:0005515
Pste3g02249 379 ProSitePatterns Tub family signature 1. 307 320 IPR018066 -
Pste3g02249 379 PRINTS Tubby superfamily signature 336 355 IPR000007 -
Pste3g02249 379 PRINTS Tubby superfamily signature 357 379 IPR000007 -
Pste3g02249 379 PRINTS Tubby superfamily signature 178 202 IPR000007 -
Pste3g02249 379 PRINTS Tubby superfamily signature 289 306 IPR000007 -
Pste3g02249 379 PRINTS Tubby superfamily signature 162 178 IPR000007 -
Pste3g02249 379 PRINTS Tubby superfamily signature 227 254 IPR000007 -
Pste3g02249 379 PRINTS Tubby superfamily signature 307 323 IPR000007 -
Pste3g02249 379 PANTHER TUBBY-RELATED 42 377 - -
Pste3g02249 379 Pfam Tub family 108 374 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02249 Pste-Chr3 15778476 15782955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02249 1 379 TUB Transcription Factor Family AT1G53320 72.351 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pste3g02249 Tub 9.3e-103 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02249 3 15778476 15782955 Pste3g02249 3 15778476 15782955 ECH