Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02243 ATGAAAGACTACACTCACAGTTGTGCCAGCAAGAACCCAACAAAAGAGTCCATCCATGTTGTCAACTGCTACAACAAGAACCAAGTGGCTAAAGACTTTTGGGAGTGCAGCAACAACTCTCATAGTCACAGCAATGCAGATCAGGACTATGTGAATGGCTTCCCATGGCCACCAAGATCATACACTTGCAGCTTCTGCAGAAAGGAGTTCAAGTCTGCTCAGGCACTTGGAGGACACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCACCCCCTACTGAAGGTCAAGGTCCTATGCTCAACCTTAACCTTGACCCTACTACAACTAACCCTAACAACTCAATTTCATCTTTGTCCTTGTTGCCATCATCTTCATCTTCTTCAACTCTTAAGCCTGTCACTTGCACATTACCCTTGTTTGTTTCTCCAAATCCTCCTTCACCTTCTTCTGAGTTGAAGAGATGGGTTGTTGTGGATGGCATTCTGCTTAACCCTTTGAGCACAAAGACCCCAGAGCACTCTAAGTCAAAGATTCCAGAATCTTTATCAGCTGGGGTTGGAGAATATGATCATGCTTTTTCCAGGAAAGATGGGTGCAAAATGTTGAAGAAAGGTGAGTTTCTCAGGATGGACTTGGAGATAGGTTTGCCTAGAGATTATGATTTGGATCTGGAGCTTCGTTTGGGTACTACTTACTCTTAG 711 0.443 MKDYTHSCASKNPTKESIHVVNCYNKNQVAKDFWECSNNSHSHSNADQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPTEGQGPMLNLNLDPTTTNPNNSISSLSLLPSSSSSSTLKPVTCTLPLFVSPNPPSPSSELKRWVVVDGILLNPLSTKTPEHSKSKIPESLSAGVGEYDHAFSRKDGCKMLKKGEFLRMDLEIGLPRDYDLDLELRLGTTYS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02243 236 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Pste3g02243 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Pste3g02243 236 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Pste3g02243 236 MobiDBLite consensus disorder prediction 97 116 - -
Pste3g02243 236 MobiDBLite consensus disorder prediction 78 116 - -
Pste3g02243 236 SMART c2h2final6 61 83 IPR013087 -
Pste3g02243 236 PANTHER OS07G0101800 PROTEIN 38 233 - -
Pste3g02243 236 Pfam C2H2-type zinc finger 61 85 - -
Pste3g02243 236 Gene3D Classic Zinc Finger 57 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02243 Pste-Chr3 15742589 15743299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02243 37 232 C2H2 Transcription Factor Family AT3G23130 40.909 4.98e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste3g02243 zf-C2H2_6 1.4e-06 CL0361