Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02176 TAACCGAGACGGCCTTAACCCTGTTACCCTTTGTCATTACATTCTCATTCTCCGAAGAGGAATGGGAATTCAGGGGTTTTTGCCGCTATTGAAATCGACAATGGTTCCAATCCACATCAAGGATCTGAAGGGATGTTCTGTAGCGGTAGACACCTACTCCTGGCTCCACAAAGGTGCCCTCTCATGCAGCACTGAACTCTGCAAAGGGATACCCACTACCAGGCACATTGAGTATTGCATGCACAGAGTAAATTTGTTGCGCCATTTTGGTGTTAACCCTATTCTAGTGTTTGATGGAGGGCTGCTGCCAATGAAGAGTGAGCAAGAGAACAAGCGTGCCAGGGTTAGAAAGGATAATTTTGCACGTGCAGTTGAACATGAGTCAGATGGAAATTCAGCTGCTGCTTATGACTGCTACCAGAAAGCAGTTGATATTTCACCTCAAGTTGCAAGTGAACTGATTCAGGTATTGAAGCAGGAGAACTTGCAGTATATTGTTGCTCCTTATGAGGCTGATGCCCAAATGACATTCTTGGCAATTAGTGGACAAGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTATTCCATGCTAGAAAAGAATAAGGAGCTAAGTTTTGAAGGATTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGATTATCTTCAGTCGTTGCCAGGTATGGGTCTCAAAAGAGCCCATGCAAGCATTAAAAAGTTCAGAAGTTATGACAAGGTTCTTAAGCACTTGAGATACAATGGAGTTTCTGTGCCTCCCTTTTATGAAGAGTCATTCAAGAAAGCTATACTTACTTTCCAATATCAACGGGTTTATGATCCAATTACTGAAAATATTGTCCATTTGTCTAGTATACCTAATGATATTGGCGATGACTTAGACTTTTTGGGCCCACCCATGCCAAAAGATATAGCACAAAGAATAGCA 1024 0.4141 MGIQGFLPLLKSTMVPIHIKDLKGCSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMHRVNLLRHFGVNPILVFDGGLLPMKSEQENKRARVRKDNFARAVEHESDGNSAAAYDCYQKAVDISPQVASELIQVLKQENLQYIVAPYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLEKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHASIKKFRSYDKVLKHLRYNGVSVPPFYEESFKKAILTFQYQRVYDPITENIVHLSSIPNDIGDDLDFLGPPMPKDIAQRIA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02176 321 FunFam exonuclease 1 209 281 - -
Pste3g02176 321 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Pste3g02176 321 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Pste3g02176 321 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Pste3g02176 321 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Pste3g02176 321 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Pste3g02176 321 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Pste3g02176 321 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pste3g02176 321 Gene3D - 209 281 - -
Pste3g02176 321 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 303 IPR036279 -
Pste3g02176 321 FunFam Exonuclease 1, putative 1 207 - -
Pste3g02176 321 Pfam XPG I-region 142 226 IPR006086 GO:0004518
Pste3g02176 321 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Pste3g02176 321 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Pste3g02176 321 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Pste3g02176 321 SMART xpgineu 138 208 IPR006086 GO:0004518
Pste3g02176 321 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 299 IPR006084 -
Pste3g02176 321 Gene3D - 1 207 - -
Pste3g02176 321 SMART xpgn3 1 99 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02176 Pste-Chr3 15196063 15200177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02176 1 314 Core DNA Replication Machinery Family AT5G26680 25.816 2.74e-20 89.0