Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02153 ACATTACTGAAGCCAGCACAGGCGGTCTCCTCTGCCACGACACTACCCGTTTGCTGCCACGTAATAAAGGGTAGAGTTGGAGACCCTTTTGGGGAGGGAAGTGTTTTTTTTAGGGAAAGGAAGGGACTTTTGGTGTGGGAGGGGGAAAGTAGAACTGGGTTTGGGGTTGAAAGGATGAAGATTCAGTGCAACGTGTGTGAGGCTGCAGAGGCCAAGATTCTGTGCTGTGCTGATGAAGCTGCACTATGTTGGGGGTGTGATGAGAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAAAGAGTTCTTCTTTCCACCTCTTCCTCTCATATGCCCAAATGTGACATTTGTCAGGAAGCATTAGGCTATTTTTTCTGTCTAGAGGATCGGGCTCTGCTGTGCAGAAAATGTGATGTGGCAATCCATACTGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACTGGTATAAGAGTAGGCCTTGAAGCTACAGACCCTGGTGCTTCCTCAACTTCTTTGAAATCAGATTCTGGGGAGAAAGTTTCAGATACCAAGTCTTCTTCTGTCTCTAGAAAGGTTTCCACAGCACCCCAGCCATCAGATTACAATGAAATTTTACCCATTGAAGTTGGAGGTGTTGGTGAGTTTCCTCCAGCTAAGGTGTCTTTTGGTGGTGGTTCTACATCTGGAAACATCTCACAGTGGACGATCGATGAATTTATTGGCCTAAATGAGTTCAATCAAAATTATGACTACATGGAAGGATCCTCAAGGGCTAACGGTGGTAAGCTTGGGGATTCTGACTCTCCTGTTTTAAGATCCGGTGAGGAGGAAATGGAGGAGGAGGATGACTATTTGGAACGCGTTCCTGATTCGTCATGGACAGTTCCTCAGATCCCTTCTCCACCTACAGCTTCTGGATTACACTGGCCAAAAGACCCTCAATATTCATCTTATAGTGTTCTGTTTGTTCCTGACATAAGCTTTTCTCACATGCCACAACCTCAGAATATTAGTATTTTTTCTAGACGCCGGAGGCAGCTTTAATTAGTTTGTTTACTCTTTTCTTATAACCTAGAGATATTGATTCCTTTTATTTCTGGTATGATTCTAAGCTCTCTCATGTTGCAGTGAAGTTTCATTTGATTGGTTACATGTTTCAATTCTTGGCTGTCTAGGGACTAGGGAGTAATCTCTAATTCTCTGCGTGTCATTGGAAATTTACCTGGCAAAGCAGCAACAAATAAGCTTGGTCTTGTAGCATTCTCATTTCTACTCTAGAATCCTATATAGATGCATCTGTGGGATTATATTGGAGATCTGATTCAATATTGGTTTGTTGTATTAAGAGTTTTGTCCCTTCACACATACTTATCATATCTAATTCTGTGACTACTTGTTTGCATAGTAATAGTG 1425 0.4288 TLLKPAQAVSSATTLPVCCHVIKGRVGDPFGEGSVFFRERKGLLVWEGESRTGFGVERMKIQCNVCEAAEAKILCCADEAALCWGCDEKVHAANKLASKHQRVLLSTSSSHMPKCDICQEALGYFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGIRVGLEATDPGASSTSLKSDSGEKVSDTKSSSVSRKVSTAPQPSDYNEILPIEVGGVGEFPPAKVSFGGGSTSGNISQWTIDEFIGLNEFNQNYDYMEGSSRANGGKLGDSDSPVLRSGEEEMEEEDDYLERVPDSSWTVPQIPSPPTASGLHWPKDPQYSSYSVLFVPDISFSHMPQPQNISIFSRRRRQL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02153 351 CDD Bbox1_BBX-like 63 105 - -
Pste3g02153 351 MobiDBLite consensus disorder prediction 168 204 - -
Pste3g02153 351 SMART bboxneu5 110 157 IPR000315 GO:0008270
Pste3g02153 351 SMART bboxneu5 58 105 IPR000315 GO:0008270
Pste3g02153 351 FunFam B-box zinc finger protein 22 59 151 - -
Pste3g02153 351 Gene3D Classic Zinc Finger 59 150 - -
Pste3g02153 351 Pfam B-box zinc finger 112 153 IPR000315 GO:0008270
Pste3g02153 351 ProSiteProfiles Zinc finger B-box type profile. 110 157 IPR000315 GO:0008270
Pste3g02153 351 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Pste3g02153 351 MobiDBLite consensus disorder prediction 259 313 - -
Pste3g02153 351 CDD Bbox1_BBX-like 114 157 - -
Pste3g02153 351 MobiDBLite consensus disorder prediction 168 206 - -
Pste3g02153 351 PANTHER B-BOX ZINC FINGER PROTEIN 22 59 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02153 Pste-Chr3 14992524 14996975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02153 59 349 C2C2-CO-like Transcription Factor Family AT1G78600 49.544 1.61e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste3g02153 zf-B_box 6.8e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02153 3 14992524 14996975 Pste3g02153 3 14992524 14996975 ECH