Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02022 TAGTCTTTAAGTTGAAATTGCCTGCAGAATCTCACGCCAAAGAGGATAATCCTCTCAGGCCTAAGCGAGAAATGGAAAATACACTTGAGTCTTCTAGCAGTCCTCGGTATAGAAAGATATCAGCTAGATGGGATCCGCTTGAAGCATGTCGGCCTATAATTGATGAAGCCCCTGTCTTTTATCCAACTATTGAGGAGTTTGAAGACACACTTGGTTACATTGCTAAGATTCGCCCCCAAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCATGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAATTTCCCACTCGTATCCAGCAAATTGACTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAATTAGGGGAAGGAAACGAAAACGTAGAAAGCAATCAAAGATGGGCATGGGTAGGAGAACAGCCAAATCAGGTTCTGAAGCTAATGTTGCTTCTGAACCAGAAGAGAAGTTCGGATTTCAATCAGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAATGTTTTTAAAGATTGCTACTTTGAATTGAATGATGCCAATGAACATGGAAAAGTTAGTGATAATAGTCACCAGCAGAGATGGGAACCCTCTGTCGAGGAAATTGAAGGAGAATACTGGCGATTAATAGAGCAACCGACAGATGAAGTTGAGGTGTATTATGGAGCTGACTTGGAAACAGGAGCACTTGGAAGTGGTTTTCCCAAGACATCTTCGTTGACTAAGAATGATTCAGATAGGTATGCCCTGTCTGGATGGAATCTGAATAACTTCCCCCGACTGCCAGGTTCAGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTCTAGTTCCATGGCTGTACGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCATTGGGGTGAGTCAAAAGTATGGTATGGAGTACCAGGAAGTCATGCTTCAGGTTTGGAAGATGCAATGAAAAAGCATTTGCCTGATTTATTTGAAGAACAACCAAATCTGCTCAATGAATTGGTGACTCAGTTATCTCCTTCAATTCTTAAATCCGAGGGGGTGCCTGTACATCGCACTGTCCAGCATTCAGGGGAATTTGTTGTTACCTTTCCAAGGGCATACCACTGTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTGAATGTGGCTCCTGTTGATTGGTTTGTGCATGGCCAGAATGCTGTCGAGCTTTACAGTTTGCAGTGTCGTAAGACCTCATTGTCTCATGACAAACTATTATTTGGATGTGCTCTGGAAGCCGTGCATGCCTTTTCAGAGCCATGTCTTCATGGAAAAGACAATCTAAAATATGTAAAATGGAGAAGTGCTAGTGGGAAAGATGGAGTTCTTACCAAGGCAGTAAAGACCAGGATAGCTATGGAAAAGGAGAGGCTTGAATGTCTTCCAACTCATTTAAAGATGCTGAAGATGGACTGTGAGTTTGATTTGTTGGAGGAAAGAGAGTGCTTCTCTTGTTTCTATGACTTGCACCTGTCTGCCATAGGTTGCACATGCGCTCCTGACAGTTATTCTTGTCTGAGACATTCAAATTTGTTTTGCTCATGTGAAATGGATAAAAGATTTGTTCTGTTTCGTTACACTATGAATGAACTAACTACGTTGGTTGAAGCATTAGAAGGAGAATCACATGCTATTGAAGTGTGGGCTAATAGAAACTCTAGAATGCTTTCTGCTAATGCCGAGTATGCTTGCATGCTCAAAAAAGATGTTGAGAGTGCCATGTACCAAACCCAGAGTTGCAAACAAGGGAAAAGCTTAACTTATTGTGCAGGAACTAATGATAAGTCAAATTCAAATATACCTAGCAGTTCTTACAGCCACATTTCTGCAGAGTTAGCCCACTCAGAGATTCACCATGAAACTTCTAGTGCACCATATGTCACTAAAGATTTCCATAAAGATAATTTGAATGAAAAAAAATTGGTTGTGGACAATGAATTTAAGGTGAAGGGAGGTTCGGTGGATTTGAATATTGATGTTATGTCGACTGAACATGAAAATTATTTTCTGCATGCTTCTGACTACTATCATAATAAGGTTGTTCCATGTGTGGAAAAAGTCTGCGATGTAGAGGCAAGAAAGGGACAAGACAACATGAATCCTGGGGCTAGTTGTATTGTTGCTTTGGAGAAAGAATTTTCATCATCTTCAAGGGGTGTTCAGCATTCTTGTACATTTGATGGTAGTAAATTGTTTGGGGTGGATCTGCAGATGCATTCTGATTTGGGAGAGCAACTCAACAGGGTATTTAAAAGGGGTGATGTTGAAACCTCCAATACATGTATATCTTTGACAAATCAAAGTGCTGTAATGCAGAAGTTTGGTGTTTCTGTTGAGCCTTTAAATTTGGGTTCTGTTATGTATGGAAAGCTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGCTTCAAGAGTCATGTTAAGTTCTTTAGCATTCTTGATCCACCAAGAATTTGTAACTATGTTTCTGAAGTCTACGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAAGTGAGGCTTTCACAAACATCTCAATAGATAAATGCTGGGAAACAGTTCTTGACAGACTAAATCATGAAATCAAGAGGCGAAGGAGTGAAGGTGAAATAGAACTTCCTACCTTGGAACTTCGGCAAAGCATTAATGGTCACGAAATGTTTGGATTCCTTTCACCGTTCATTATTAAGGCCATTGAAGCTCAGGATCCCAATCATCAGTGTGTCGAGTACTGGAATGACAAAGAAGTTGTCTCTGAATCTTCAGGCAGTGCCATTGATGATTGTAAGCTCAGTCATGGTTCAAGTAACTCTCTAGGTGATGTCAAGACCAAACTTTATGGTGTCGGTTTGATAAAGCAGGAGCAAGATAGAATCAGAGGAAGTTGTGATTCTTTTGAAGAGATAAAATTGGTTCTACAAGGATTCTTGAAAAAGGCAAGTCCCGATGAATTAAATGCCATGCATAACTTATTCAGCTCTGATGCACAGCTCACCAAGTGGAGAGCGGCATTTATGGATAATGCCATTGACCCATTGAAGGTGCTAATGTCATTTAGCCATTCCATCTTTCCTTTTGAGTTTATATTTACTTTTGATGGTCTAGCCTGCAGCTTCGATAGTAAT 3257 0.4077 MENTLESSSSPRYRKISARWDPLEACRPIIDEAPVFYPTIEEFEDTLGYIAKIRPQAEPYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKIRGRKRKRRKQSKMGMGRRTAKSGSEANVASEPEEKFGFQSGSDFTLKDFQQYANVFKDCYFELNDANEHGKVSDNSHQQRWEPSVEEIEGEYWRLIEQPTDEVEVYYGADLETGALGSGFPKTSSLTKNDSDRYALSGWNLNNFPRLPGSALCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGESKVWYGVPGSHASGLEDAMKKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVHRTVQHSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWFVHGQNAVELYSLQCRKTSLSHDKLLFGCALEAVHAFSEPCLHGKDNLKYVKWRSASGKDGVLTKAVKTRIAMEKERLECLPTHLKMLKMDCEFDLLEERECFSCFYDLHLSAIGCTCAPDSYSCLRHSNLFCSCEMDKRFVLFRYTMNELTTLVEALEGESHAIEVWANRNSRMLSANAEYACMLKKDVESAMYQTQSCKQGKSLTYCAGTNDKSNSNIPSSSYSHISAELAHSEIHHETSSAPYVTKDFHKDNLNEKKLVVDNEFKVKGGSVDLNIDVMSTEHENYFLHASDYYHNKVVPCVEKVCDVEARKGQDNMNPGASCIVALEKEFSSSSRGVQHSCTFDGSKLFGVDLQMHSDLGEQLNRVFKRGDVETSNTCISLTNQSAVMQKFGVSVEPLNLGSVMYGKLWCSKHAIYPKGFKSHVKFFSILDPPRICNYVSEVYDAGFLGPLFKVTMEEHPSEAFTNISIDKCWETVLDRLNHEIKRRRSEGEIELPTLELRQSINGHEMFGFLSPFIIKAIEAQDPNHQCVEYWNDKEVVSESSGSAIDDCKLSHGSSNSLGDVKTKLYGVGLIKQEQDRIRGSCDSFEEIKLVLQGFLKKASPDELNAMHNLFSSDAQLTKWRAAFMDNAIDPLKVLMSFSHSIFPFEFIFTFDGLACSFDSN 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02022 1062 ProSiteProfiles JmjN domain profile. 33 74 IPR003349 -
Pste3g02022 1062 FunFam Putative lysine-specific demethylase JMJ16 791 929 - -
Pste3g02022 1062 Pfam F/Y rich C-terminus 847 933 IPR003889 GO:0005634
Pste3g02022 1062 Pfam JmjC domain, hydroxylase 274 390 IPR003347 -
Pste3g02022 1062 Pfam C5HC2 zinc finger 497 548 IPR004198 -
Pste3g02022 1062 MobiDBLite consensus disorder prediction 104 142 - -
Pste3g02022 1062 Pfam jmjN domain 34 67 IPR003349 -
Pste3g02022 1062 ProSiteProfiles FYR domain FYRN motif profile. 785 843 IPR003888 GO:0005634
Pste3g02022 1062 SMART cupin_9 241 407 IPR003347 -
Pste3g02022 1062 MobiDBLite consensus disorder prediction 105 123 - -
Pste3g02022 1062 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 697 - -
Pste3g02022 1062 Gene3D Cupin 18 391 - -
Pste3g02022 1062 Pfam F/Y-rich N-terminus 796 840 IPR003888 GO:0005634
Pste3g02022 1062 SMART fyrc_3 849 944 IPR003889 GO:0005634
Pste3g02022 1062 ProSiteProfiles FYR domain FYRC motif profile. 845 935 IPR003889 GO:0005634
Pste3g02022 1062 ProSiteProfiles JmjC domain profile. 241 407 IPR003347 -
Pste3g02022 1062 SMART JmjN_1 32 73 IPR003349 -
Pste3g02022 1062 SMART fyrn_3 799 843 IPR003888 GO:0005634
Pste3g02022 1062 SUPERFAMILY Clavaminate synthase-like 151 428 - -
Pste3g02022 1062 Gene3D - 790 929 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02022 Pste-Chr3 13821852 13831064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02022 705 972 JUMONJI Transcription Factor Family AT1G30810 42.857 1.61e-52 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pste3g02022 JmjC 4.9e-45 CL0029