Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01952 AATTTCTCAGTTGAACTTAGAACTTTTTTTCTCTATTATCTTTCTCTTTCTCCACACCTTTATTGCAAGAAAAATGAGCAACATAGGCTTGGTAGAGGCAAAGCTGCCACCAGGGTTCAGGTTTCATCCAAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGATGACACACAATGATTCTCTTCTCATGATTGACGTTGACCTTAATAAGTGTGAGCCATGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAAGAGTGGTATTTTTACACACAAAGAGACCGTAAGTATGCAACAGGGCTACGCACAAATCGTGCCACAGCCTCAGGGTATTGGAAGGCCACAGGAAAGGACAGACCTATACTTCGCAAGGGCACTCTTGTTGGTATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGAAGGAAAACTGAATGGGTCATGCATGAGTTTCGTATTGAAGGTCCCCATGGACCTCCTAAAATTTCTTCCTCCAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGCAGCAAAACCTAGCATGGGTAGCTGCTACGAGGACACAGGATCTTCATCCCTTCCAGCATTAATGGATTCTTACATTAGTTTTGACCAAACTCAAACCCATGCAGATGAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAGAACCAAACAAACCCCATTTTCAACCACATGACAACTATGGAGACTAAATTACCTGCCAATTATGGAGGAGCACCAAATTTGGGTTATTGCTTAGACCCTTTATCCTGTGACAGAAAAGTTTTAAAAGCTGTTCTGAGTCAGATCACAAAGATGGAAAGGAATCCACTTAACCAAAGCCTTAAAGGGTCACCAAGTTTAGGTGAAGGAAGTTCAGAGAGTTACTTATCTGAAGTGGGCATGCCCCACTTGTGGGCCAATTACTGATGTGGGACTTCAGTCCTTAAACCCTCTTCCCCCATTCCACCAAGGGAAAAAGTGAAGGGAAATCAATAAAAAAGGAAAAAAGCAGAAGGGGGAAGATAAAATTATTCAATTGTTTCAAGTCATGGTGAGTAAACTATGTTTTACCTGTGGTGTTTAGCTATTAATATATACCCATCCATGATGTGTCCCAATATATTAGGAAAATGGGACTTGTAATTGAAACTTATAAAAAATATTTGTAGTTAATTTTAGTTAGTGGATGATTTTTTCTTCTTCTTGTTAAATTAGATGCTGAACTGTTATGAAGATGATTGCATTCCACCTTTGTAATGGAGAAGTTTCCATGAGACAACATTCTTTATATATATCCTGCTAAATGTTTA 1353 0.3991 MSNIGLVEAKLPPGFRFHPRDEELVCDYLMKKMTHNDSLLMIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNREVAAKPSMGSCYEDTGSSSLPALMDSYISFDQTQTHADEFEQVPCFSIFSQNQTNPIFNHMTTMETKLPANYGGAPNLGYCLDPLSCDRKVLKAVLSQITKMERNPLNQSLKGSPSLGEGSSESYLSEVGMPHLWANY 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01952 298 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Pste3g01952 298 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 210 - -
Pste3g01952 298 FunFam NAC domain-containing protein 100-like 20 162 - -
Pste3g01952 298 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Pste3g01952 298 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Pste3g01952 298 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01952 Pste-Chr3 13297552 13302271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01952 2 292 NAC Transcription Factor Family AT1G56010 60.256 8.33e-125 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g01952 NAM 2.2e-36 No_clan