Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01918 ACTTGTTCACCCTTTCCATCTTCTTCCAAAACTCCCCTTCTCTTTCTGCGTCTGCGTCTGCGTCTGCCTCTGCCTCTGTTTGATCACTTCCATTCCACCCTTTCCCTGCCCCTTCTGTGATGATGTAGATAGAGAGCATTAGAAGATAGCAGTGTGCAGTGAGAAACAGATTGGTCCTGGGTGGGTTTCTTTTTCAATTGTTTCATGGGTGAAGAGGGACTACAGCTGTCAATACAGAAGGAAAAACGCATGGGAGTTCATGCAAATCAGTGCTTCTATACTGCTTCCTCTGCAAATTGGCGCCCTTTTAGACACCACAATTCCTATTCCATGCCTCCTTTTAAGTGAAAAAAACAAAAAAGAAAGAAAGAAAAGAAGACAAAATTATTTTTGTTTTCTCTGCTTTTCTTCTTGAGATCTTAATATACATTCATTCACTTAAAATAAAGGGATCAAACTTAAGTTGGTTGATCGATCTAATAAGATCCGTGCTCATGAAGAGACTTGGGAGTTCAGATTCTCTGGGTGCTCTCATGACCATATGTCCACCAACAGGTTAACTGAATTGAAACTTGGGCTTTTAGCTTTGTTTCCATTTTTTTTTAAAAAAAAAAAAATTCAGACAGATCCATGAAGCATGTTTGTGCCTTGTCCTGTCTCAACTTTTTCTGTTTGGATTATTTTTTATTCATTTATGTATTGCATTACGGGTTAGTTTGGAGAGACAGGAGCAACAGCATGCACACTAACGATATGATTTGCATTGACACAACAGACGAACAGAGTCCTCGGAACAAGCACGTGTATGGGAGGGAGTTCCAGTCGATGCTGGAGGAAGAAGGGTGCGTTGAAGAAGCAGGACAGCAGTCTGAGAAGAAACGACGACTAAGCGTGGATCAGGTGAAGGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTGGAACCTGACAGAAAGGTGAAGTTGGCACAGGAACTAGGGTTGCAACCGAGACAAGTAGCCGTTTGGTTCCAAAACCGTCGTGCGAGGTGGAAAACAAAGCAATTGGAAAGAGACTACGGTGTTCTGAAAGGCAATTATGAATCGCTTAAAGTTAAGTATGAGACAGTCCAACAAGAGAATGAAGCGTTAGTGAAAGAGATAAAGGAATTGAAAACGAGGATGGAAGAAGAGAGGAAGAGCAAAAGCGATGGGTGGGTGAAGGAAGAGAGGACAACAGTGGCGGTGTGTGAAAGCCTGATTCCGGGATCGGAGTGTTTTAGCAAGAGTGAAGAGGTGGCGAGGGAGGGGGCATCAGACAGCGACTCAAGTGCGATACTGAACGAGGAGAACAACCAGAGTCAGAGTCCGAGTCCGAACAACGCGGCGATATCTTCGTGTGGGGTTCTGCAGAGTGATGGGCTTTTGTCCGTAAACTGTTTCCCCTTCCAGAAACAATACCAGGGGACGCAGTACGTCAAGCTTGAGGAGCACAACTTTGTCAGTGCGGACGAGGCCTGCAATTTCTTCTCCGATGAACAACCACCCACTCTGCAATGGTACTGTTCCGAGGAGTGGACTTAATAACGGGGTTATCTATGTATAGTATAGTAATGGACATGGGAGAAACAAGGTTGTATAAATCAAACCAAACTGGGGGATCAAGGATCAAGGATCAAGGATTAGCATATAGCATATGCTCTACCTCACGCTCAAGCGGTTCGGATTCGGATATGACCATAAAAAGCCTAAAAATAATAATCATCAATCTCTCGGGTCCAGCCCGTGCGGGTAATTTATCAATAAGTAATCATTAGGTTAATCAAATCTACTATATGCTGTAAAAATCCACCATTCACCACTTTTATCGCCTTCTATTTATCTCCATTTCTATTGCTTTTTTTTACTATACAAAAATTAGACTAAGCTTCTATTTCCATTTTTTTTTAAAAATAAAATATTATTTCAATAATCAATTATATAAATAAATAATTTTGAACAAATTTATACAATAAAAATATATAATCAATTTTATTTACAACC 2022 0.411 MKHVCALSCLNFFCLDYFLFIYVLHYGLVWRDRSNSMHTNDMICIDTTDEQSPRNKHVYGREFQSMLEEEGCVEEAGQQSEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKGNYESLKVKYETVQQENEALVKEIKELKTRMEEERKSKSDGWVKEERTTVAVCESLIPGSECFSKSEEVAREGASDSDSSAILNEENNQSQSPSPNNAAISSCGVLQSDGLLSVNCFPFQKQYQGTQYVKLEEHNFVSADEACNFFSDEQPPTLQWYCSEEWT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01918 310 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Pste3g01918 310 Coils Coil 150 184 - -
Pste3g01918 310 CDD homeodomain 82 138 IPR001356 GO:0003677
Pste3g01918 310 SMART HOX_1 80 141 IPR001356 GO:0003677
Pste3g01918 310 Pfam Homeodomain 82 135 IPR001356 GO:0003677
Pste3g01918 310 Pfam Homeobox associated leucine zipper 137 178 IPR003106 GO:0006355|GO:0043565
Pste3g01918 310 SUPERFAMILY Homeodomain-like 70 139 IPR009057 -
Pste3g01918 310 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Pste3g01918 310 Gene3D - 77 144 - -
Pste3g01918 310 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 304 IPR045224 GO:0003700
Pste3g01918 310 FunFam Homeobox-leucine zipper protein HAT5 75 139 - -
Pste3g01918 310 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Pste3g01918 310 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01918 Pste-Chr3 13022756 13024880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01918 37 310 Homeobox Transcription Factor Family AT4G40060 44.099 1.77e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste3g01918 Homeodomain 3.3e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01918 3 13022756 13024880 Pste3g01918 3 13022756 13024880 ECH