Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01903 TTCGCCTCTTCATTGAAATTGTTTCACCACTTTTTAAATTTCTTCTCCCTTTTATTCACCCAAGAAGTAAGAGAAACTCACACCCAAAGAGAGAGAGAAGAGAGAGAAGATAAGATGGGTGTGAATGAAAATTTCAACAAGGATCATGATCATGGGTATGTGGATGATGACGATGATGTTCCACTTCCTGGATTTCGATTCCACCCCACAGATGAAGAACTTGTTAGCTTCTATCTTCGAAGGAAGCTTGACAAGAAACCCATCAGCATCGACCTCATCAAACAAATTGATATTTACAAATACGATCCTTGGGATCTTCCAAAAACCAGTGCCACAGAAGGGGAAAAGGAGGGTTACTTCTTTTGCAGAAGAGGGAGGAAGTATAGGAATAGCATAAGGCCTAACAGAGTGACTGGCTCAGGGTTCTGGAAAGCAACTGGCATAGACAAACCAGTGTACTCACATGGAGGAGAAGGCAATGACTGTATTGGACTCAAAAAAACACTTGTCTATTACCGTGGCAGTGCAGGCAAAGGCATTAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCTTCTAACACAGACACCACAAACCTTCCCAACTCCAAGAATTATGTAGATATTCCACAAGAAGCTGAAATCTGGACATTATGTAGAATTTTCAAGAGAAATGTCACACATAGGAAGCACACACCAGACTTGAAACAATTATCAGCTAAGCGCCATTCCATTCATGACAAAAACTCTAGGACGAACAATGTGGATTTTCACAGTAATAATCAAGAAGCATACATCAACTTTGGTGATCACTATCAAAATGATCAAAAACCAGTCATCAACTACACAAACAGTGATGAAAGGAATCAATTTCATGTGAATCAGTTGTATACTCCAGTGGCACAGCAACCTCAACTTATAACTGCACCACCTTCTAACCTTTGGAGTAACCAAGTTGGGAACGATTTCTTCAGCTTTGATAATTGGGATGAGCTTGGATCTGTAGTGAAGTTTGCTGTTGATTCTCCTAGCTTGTAGATAAAGATGTGGTTCATGTGGAGTTGAACGTAGTTAGGTATAATAGATTGAAATACATCATAAGAGTGCGTTTGCATGTATTAGAGATATTGATGATGTTGTTGATCATGACTTCTATAGTAGCAGACTTGTTGACACGATATGTATGAATTTGTTGCTTCTAATACTAATCCGTAC 1215 0.3942 FASSLKLFHHFLNFFSLLFTQEVRETHTQREREEREDKMGVNENFNKDHDHGYVDDDDDVPLPGFRFHPTDEELVSFYLRRKLDKKPISIDLIKQIDIYKYDPWDLPKTSATEGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGNDCIGLKKTLVYYRGSAGKGIKTDWMMHEFRLPSNTDTTNLPNSKNYVDIPQEAEIWTLCRIFKRNVTHRKHTPDLKQLSAKRHSIHDKNSRTNNVDFHSNNQEAYINFGDHYQNDQKPVINYTNSDERNQFHVNQLYTPVAQQPQLITAPPSNLWSNQVGNDFFSFDNWDELGSVVKFAVDSPSL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01903 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 60 274 - -
Pste3g01903 345 Pfam No apical meristem (NAM) protein 63 191 IPR003441 GO:0003677|GO:0006355
Pste3g01903 345 Gene3D NAC domain 70 228 IPR036093 GO:0003677|GO:0006355
Pste3g01903 345 FunFam NAC domain-containing protein 35 70 227 - -
Pste3g01903 345 MobiDBLite consensus disorder prediction 28 53 - -
Pste3g01903 345 ProSiteProfiles NAC domain profile. 61 224 IPR003441 GO:0003677|GO:0006355
Pste3g01903 345 SUPERFAMILY NAC domain 62 224 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01903 Pste-Chr3 12838638 12840994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01903 48 233 NAC Transcription Factor Family AT5G39820 57.500 2.95e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g01903 NAM 1.1e-34 No_clan