Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01897 AAGCAACACCCCACAGTGCTGTCGTGGAAATTCCCGAATCAGATGTGTAAGATCATTATAAATAATCCAGAACAAGAACCCTAATTTTCAAAGACAGGGAGTGTTGCGTTGGGTTTGTTGAATCGGAAGATGGAGGAGGAAGAGCACGAGGTGTACGGTGGAGAGATCCCCGACGAGGGAGAGATGGAAGGAGACGTGGACATGTCCGCTGCCGACGATGACGCCGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGATTGAAGGAAATGGAGGAGGAAGCCGCAGCGCTTCGCGAGATGCAAGCCAAGGTCGAGAAGGAGATTGGCAGTGTTCAAGATCCTGCTAATGCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTCGGTCTGTTTTTGTTGGCAATGGTCATCTTATTACTCAGAATGTCTTAAAGATGCATCAACTTCACTCCTGGAGGAGACAGCTTGTGGTTCTTTTGGAAGAACATTCTGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCCTGTGGTACTGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCCTATGTGGAATTTGTTGAAGTTGAGGCTGTTCAAGAGGCTCTCCTATTGAATGAATCTGAATTGCATGGCCGGCAATTGAAGGTTTTGCCTAAGAGGACTAATGTTCCTGGTATGAAACAATATCGTCCTAGGCGCTTTAATCCTTACATGGCATATGGCTTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATATGGGTATGTTGCGGGCCTCATCTAAATGTGTGTACGTTATGCCCAATGTTGTTTTGATTGATGTTTTAAATTTTCTTTTATTATCCATTAAATATGTTGCAGGAAGGTTGCTAGGTTTAGAAGGCCAAATCGTTACATGCCATACTACTAGAAGTTTCACATTGAATGTGTTAGAATGTGAAGATGGTGCATCCTGGAGCAATAATTTGTCGATTTGGGGATCGACTCTATCTTCATTCAGTATTATATACCCTGTGACTGAGAATATTGCCGTCCATTTGTCTTGGGATGCTATTGAACTTCTATTTTTCTTGCGTAGTTCTTGGAAGATGGTTTACAGTTGCCATTGAATATTATGTTAGTGATTTTTTCAGTCTTCATAGCTTATACTAACCAAAGATGTACCCTTTGGTAAACTTATCAGGTCTTCTCGTCTGTCTGGTGGCACCAAAATTCGATCACATCTCTAATTTAATTTCATATTATCACATCAGAATTTAAATATGAATGATGGTTTACCGGAGCATTTGGGGTTATGAACTTATTATTTGTGTCATAGTGTCTTGCGCC 1382 0.4276 MEEEEHEVYGGEIPDEGEMEGDVDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGSVQDPANAAASQANKEEADSRSVFVGNGHLITQNVLKMHQLHSWRRQLVVLLEEHSVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYTPPYFYSPYGYGYVAGLI 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01897 235 SMART rrm1_1 88 188 IPR000504 GO:0003723
Pste3g01897 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 186 IPR000504 GO:0003723
Pste3g01897 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 192 IPR000504 GO:0003723
Pste3g01897 235 Coils Coil 30 64 - -
Pste3g01897 235 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 199 - -
Pste3g01897 235 SUPERFAMILY RNA-binding domain, RBD 123 212 IPR035979 GO:0003676
Pste3g01897 235 CDD RRM_II_PABPs 123 188 - -
Pste3g01897 235 MobiDBLite consensus disorder prediction 1 23 - -
Pste3g01897 235 Gene3D - 15 199 IPR012677 -
Pste3g01897 235 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01897 Pste-Chr3 12763827 12769190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01897 122 187 Eukaryotic Initiation Factors Gene Family AT2G36660 34.328 6.19e-07 47.8