Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01888 GAAGGAGCGAGTGAAGCGGGCCAACGCCACGCAATACCCTCATCCTTCCTCAACTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTCGCACTCAGCAGGCAGGGCTACCGCTCCGCAGCTACCACCAGATGGCAGTAACACCTTTTGGTGGTACATCTGCTGCACAATGGGGAATTCATCCCCAGCTATTATTAAGATCCAGTATCACAGGCAAGGTTGCATCATCCTGTCACAGTGTTACTGGCAGGGTAAGCTTAATGTCTGCATCAAGTTCAAGCTTTTTTTCTTCAGATTCAACACTACTCAATATGGGTTTGCCCCAAACTTTTAATCGTCGAAAGGGATCAAGGTTGATTGTTAGAGCAGATGCAGATTATTATTCTATCCTTGGGATTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGCGCTTATCGGAAGCTTGCACGGAGTTATCATCCAGATGTTAACAAAGAATCTGGAGCTGAACAAAAATTTAAGGAAATTAGTAATGCATATGAGGTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATCGTGGTGCAGGTTCCAGAGGTTCTTGGAATGGAGCAATTGATGGTGAAGATGAGTATTACAGTCTAGTTTTGAACTTTAAAGAAGCAGTTTTTGGCATAGAAAAAGAGATAGAGATAAGTCGATTAGAGAGCTGTGGAACCTGCAATGGTTCAGGGGCTAAACCAGGGACTGCACCATCCAGATGTAGCACTTGTGGAGGTCAAGGCCGGGTTGTCTCATCTACAAGAACTCCATTAGGCATTTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGCACTGGAGAAATTTCAACACCTTGCAATACATGTTCTGGAGATGGTCGGGTGAGGAAATCAAAACGGATAAGTCTGAAGGTCCCAGCTGGTGTGGACTCTGGTAGTCGTTTAAGGGTCCGAAATGAGGGGAATGCTGGAAGGAGAGGTGGTTCCCCTGGCGACCTCTTTGTAGTAATTGAAGTTATCCCAGATCCTGTACTTAAACGAGATGACACCAACATTTTATACACCTGCAAGGTTTCGTATATTGACGCAATCCTGGGTACCACAGTTAAGGTGCCTACGGTAGATGGAATGGTGGATTTAAAAATTCCTGCTGGGACACAACCGAACACAACGCTTGTTATGGCCAAGAAAGGTGTTCCCTACCTGAATAAAAACAATATGAGGGGTGATCAGTTGGTTCGTGTACAAGTTGAAATCCCTAAAAGACTAAACAATGATGAGAGAAAGCTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCCACTGGTAGGAGATAATATAGTGGGAACTCTATCTATCTTATCTACTTTTTTCTACTTCAGCAAATATTATTCTTTCAGATGCATCATTCTTGATTACGCATTTACTGAGGACAAATTAGCAGCTATTGTAATCTGCAAGGGATTAAATGGTGCAAGGGATTAAATGGTGTTTTCATGGAGGTTGTTTATTTGTCCTTGGAAATAGGCGGGGAGATGAAGAGCAGAAGATATTAGAGTTTAGAGATCTTTTTTTCGTTGGGACTTATACGCTTCTTGTAATTTATTTTGGGGTGGGGTGATATTGAATTATGCTCTAGGTTCAATGCTATCTTTATTTCCAAAAATTAGATGCTCTGAGAAAAAAATAATAATAATTATTTATCACATATATTGAAAGATTATATATTCCT 1850 0.4162 EGASEAGQRHAIPSSFLNSSLSLSLSLSLSLSVRTQQAGLPLRSYHQMAVTPFGGTSAAQWGIHPQLLLRSSITGKVASSCHSVTGRVSLMSASSSSFFSSDSTLLNMGLPQTFNRRKGSRLIVRADADYYSILGISRNASKSEIKSAYRKLARSYHPDVNKESGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPFDLFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTAPSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGRVRKSKRISLKVPAGVDSGSRLRVRNEGNAGRRGGSPGDLFVVIEVIPDPVLKRDDTNILYTCKVSYIDAILGTTVKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPYLNKNNMRGDQLVRVQVEIPKRLNNDERKLIEELADLSKGKTATGRR 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01888 484 ProSiteProfiles Zinc finger CR-type profile. 254 335 IPR001305 GO:0031072|GO:0051082
Pste3g01888 484 SUPERFAMILY HSP40/DnaJ peptide-binding domain 235 390 IPR008971 GO:0006457|GO:0051082
Pste3g01888 484 SMART dnaj_3 128 185 IPR001623 -
Pste3g01888 484 Pfam DnaJ domain 129 190 IPR001623 -
Pste3g01888 484 SUPERFAMILY Chaperone J-domain 126 222 IPR036869 -
Pste3g01888 484 FunFam Chaperone protein dnaJ 1, mitochondrial 377 484 - -
Pste3g01888 484 CDD DnaJ_zf 267 330 IPR001305 GO:0031072|GO:0051082
Pste3g01888 484 Pfam DnaJ central domain 267 330 IPR001305 GO:0031072|GO:0051082
Pste3g01888 484 Gene3D - 237 372 - -
Pste3g01888 484 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 90 480 - -
Pste3g01888 484 FunFam Molecular chaperone DnaJ 259 335 - -
Pste3g01888 484 CDD DnaJ_C 238 460 - -
Pste3g01888 484 CDD DnaJ 129 182 IPR001623 -
Pste3g01888 484 Pfam DnaJ C terminal domain 242 457 IPR002939 -
Pste3g01888 484 ProSitePatterns Nt-dnaJ domain signature. 170 189 IPR018253 -
Pste3g01888 484 FunFam Chaperone protein dnaJ A6 chloroplastic 126 229 - -
Pste3g01888 484 Gene3D DnaJ domain 126 230 IPR036869 -
Pste3g01888 484 Hamap Chaperone protein DnaJ [dnaJ]. 126 480 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pste3g01888 484 SUPERFAMILY HSP40/DnaJ peptide-binding domain 382 468 IPR008971 GO:0006457|GO:0051082
Pste3g01888 484 Gene3D - 267 330 - -
Pste3g01888 484 NCBIfam molecular chaperone DnaJ 129 473 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pste3g01888 484 PRINTS DnaJ domain signature 149 164 IPR001623 -
Pste3g01888 484 PRINTS DnaJ domain signature 185 204 IPR001623 -
Pste3g01888 484 PRINTS DnaJ domain signature 165 185 IPR001623 -
Pste3g01888 484 PRINTS DnaJ domain signature 131 149 IPR001623 -
Pste3g01888 484 Gene3D - 377 483 - -
Pste3g01888 484 ProSiteProfiles dnaJ domain profile. 129 193 IPR001623 -
Pste3g01888 484 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 254 334 IPR036410 -
Pste3g01888 484 FunFam Putative Mitochondrial DnaJ chaperone 322 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01888 Pste-Chr3 12669635 12677489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01888 130 190 C2H2 Transcription Factor Family AT1G74250 44.776 2.40e-09 57.8