Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01885 ATGCAAGCAGTTGAAGAGCCTAACATAAAGGTAGGAAGGTACTCAGAAGAAGAAAGGAAAGAAAGAATTCTCCGATATTTGAAGAAAAGAAATCAAAGAAACTTTAACAAAACCATCAAGTACGCATGTCGGAAAACCTTAGCTGATAGGCGAGTCAGAGTTAGGGGAAGGTTTGCGAGAAACAATGAGCTTTGTGAAGAAGACATGGCAACCAAAAAGCATGAGAATCATCACCACAAAGAAGACTTTTATGGTGGCGATTCAATCCAGTTCCAGTTAAAGAATGATGAGGAGGATTGGCTGCAAGAGGCCATGGCAAGTCTAGTGTATTTATCTCATTCTTCACCAGAAGACATGTAACTTAATTGGCATAATCGATTTCACATGCTAGACGACTTCATCTAGTGGAATAGATAAAGCTTGGTTG 427 0.3958 MQAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDMATKKHENHHHKEDFYGGDSIQFQLKNDEEDWLQEAMASLVYLSHSSPEDM 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01885 119 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 77 IPR045281 GO:0009909
Pste3g01885 119 ProSiteProfiles CCT domain profile. 19 61 IPR010402 GO:0005515
Pste3g01885 119 Pfam CCT motif 19 61 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01885 Pste-Chr3 12635229 12636174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01885 15 68 C2C2-CO-like Transcription Factor Family AT5G24930 44.444 1.06e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste3g01885 CCT 1.9e-17 CL0281