LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g01882	ATGGTCAAAGTGGATCCGATACCAGGTTCATCACATAAACCAAAAACTGGCATCATAGTTGGAATTGTTATAGGGTTAGTTGTTATCCTTTTCCTTGGTGGTCTTCTATTCTTTTGGTGCAAGGGTAGACACAAGGGCTACAGGCGAGAAGTTTTTGTAGATGTTCCAGGTGAAGTTGATCGCCGAATTGCATTTGGTCAGCTAAAAAGATTTGCATGGAGAGAACTACAGATAGCTACTGACAACTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTGAAAAGGTTGACTGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAGGTGGAGATGATAAGCGTTGCTGTGCATAGGAACCTGTTACGGCTTATTGGGTTTTGCACTACTCCAACTGAGCGTCTCTTAGTTTATCCTTTTATGCAGAACCTAAGTGTAGCCTATCGTCTTCGAGAACTCAAACCTGGTGAACCTGTTCTGGACTGGCCTACAAGAAAACGAGTGGCTCTGGGGACAGCCCGTGGCTTAGAATACCTTCATGAGCATTGCAATCCCAAAATTATTCATCGAGATGTGAAGGCGGCTAATGTATTACTAGATGAAGATTTTGAAGCTGTTGTTGGTGATTTTGGCCTGGCAAAGTTAGTCGATGTTCGAAAAACTAATGTGACAACTCAAGTTCGTGGGACAATGGGCCATATAGCTCCAGAATATTTGTCCACTGGAAAGTCTTCGGAAAGGACTGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACTGGTCAACGAGCAATTGACTTTTCAAGATTAGAAGAGGAAGATGATGTGCTTTTGCTTGACCATGTTAAGAAATTAGAACGGGAGAAAAGACTAGATGCGATTGTTGACCGCAACCTAAATAAAAATTACAACATACAAGAGGTAGAAATGATGATACAAGTTGCATTGCTGTGTACGCAAGCAACACCAGAGGACCGTCCACCAATGTCTGAGGTTGTAAGAATGCTTGAAGGAGAAGGATTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCAATCGGAGGCAAGAATACGAGAGATTACAAAGAAGATTTGATTGGGGAGAAGATTCGGTCTATAATCTAGATGCCATTGAGTTGTCTGGTGGGAGATGAGAAGATCTATATAAATTTAAAACATATATGTTGTATGCGTACCTCAATATCTTTTTGGGTAGGTAAGCTTTTATTAGAAATGTATTTTTTCTTGTTTTCCAACTGTAAAAAAGGGGATTATAGTTGTAAAATTTTGATGTTTCAATCTGCTCGTTGTGTTTTTGTTGGGGCGATCAATCAAGAATTTGTTAGAAAATTCTGTTTGGAGAAATTTAAGCTGTTAACCCAGTACAGGGGAACCTATTAATTACAAAACAGGTATATTGCGACTTGTCAAACAATGATTTGGCACTTCAAGGATTGATCTCTGAATCTAAAAATATATCTGGTGCGGTA	1557	0.4021	MVKVDPIPGSSHKPKTGIIVGIVIGLVVILFLGGLLFFWCKGRHKGYRREVFVDVPGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIQVALLCTQATPEDRPPMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNLDAIELSGGR	406

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g01882	406	Gene3D	Transferase(Phosphotransferase) domain 1	160	377	-	-
	Pste3g01882	406	FunFam	Somatic embryogenesis receptor-like kinase 1	160	377	-	-
	Pste3g01882	406	ProSitePatterns	Protein kinases ATP-binding region signature.	89	111	IPR017441	GO:0005524
	Pste3g01882	406	FunFam	Somatic embryogenesis receptor kinase 1	52	159	-	-
	Pste3g01882	406	SUPERFAMILY	Protein kinase-like (PK-like)	63	358	IPR011009	-
	Pste3g01882	406	CDD	TM_EGFR-like	14	48	-	-
	Pste3g01882	406	ProSiteProfiles	Protein kinase domain profile.	83	362	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g01882	406	SMART	serkin_6	83	357	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g01882	406	Pfam	Protein kinase domain	84	355	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g01882	406	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	206	218	IPR008271	GO:0004672\|GO:0006468
	Pste3g01882	406	Gene3D	Phosphorylase Kinase; domain 1	52	159	-	-
	Pste3g01882	406	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	65	368	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g01882	Pste-Chr3	12613008	12618680	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g01882	9	406	Receptor kinase-like Gene Family	AT5G10290	88.191	0.0	705

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Pste3g01882		Pkinase	2.3e-43	CL0016