LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g01872	AGTCTAACTCTCACTATTCTTATACGAGCTCAGGATCAATCAGGATTTATCAGCATAGATTGTGGAGCAACTACAGATGCGATTTACACAGAATCGACAACAGGTATAAATTATACTTCTGATGCTAATTTCATAAATACTGGTGTCAGTGGAAAAATAACACCTGAACTTAAAAATGGGTATCAACGACCATATGAGAGTGTTAGAAGTTTCCCTGAAGGAATAAGGAATTGCTACAAAATAAATATTACAAGAGGCTCAAAGTATTTGATCAAGATTGGTTTTTTGTATGGAAATTATGATGGCCTAAATGTGTTGCCAAAATTTGATCTTCTTCTTGGGGCCAACTTATGGGCTACAGTGAATATAAACAACGCCTTTCTTTTCCAAAGGAATGAGATCATATATGTACCTTCCCAAGATTACATACAAATTTGTCTAGTTAACACAGGACATGGGACACCATTTATATCAGCCATAGAATTGAGAACATTGACAAATGATATTTATGTCACTGAATCTGGATCGTTGGAAACTTTCTACCGCGGTGATTTGGGTTCAAACATAGGCTACAGGTACAAGGATGATGTTTATGATCGTTTTTGGAGCGTTGGAAACAAAAATGAATGGAAAAAATTGAGTGTTTCAATTAACTCTGCTGATTTAGATCAAAACATATACAAACCACCAACTATTGTCATGAGCACTACAGTTACACCAACAAATGTTAGTGCTCCATTAGTAATAAATTGGGAACCAAATAATCCAGTTGACCAATTCTATGTTTACTTGTACTTCATGGAGATTGAAGTGTTAGCGATGAATCAAACAAGAGAATTCAACATCATTGAAAATGGTAAATCAAGGTATTCAAACTTTTCACCAAAGTATGGGCTTGTCACCACGTTATATAGCTCGTCAAGCTCTAGTGGGAAAGAAATTATATATACAATTGAAAAGACAAAAAATTCAATTTTGCCTCCAATTATGAATGCCATTGAGATTTACAAAGTACTAGACTTCCCTCAACCAAATACATTCCAAGGAGATGATGAGGCAATCACAACCATCAAGTTAGTTTATCGGGTGATAAGAGATTGGCAAGGTGATCCATGTGCTCCTATAGACTACTTGTGGCATGGCCTAAATTGTAGTTATCATGAAAAAGAGTCTCTAAGAATCACTAGCTTGAATTTGGCTTCAAGTGGATTGTCAGGAAAGATAGATCCCTCAATTTCAAAGCTCACTATGTTGGAGAAGTTGGATTTATCGAATAATAGCTTAAATGGTGAAATTCCTAGTTTTCTATCTCAATTGCAACAATTAAAGATCTTAAACTTGGAGAAGAATAATCTTTCTGGTTCAGTTCCCTTAGCACTTATTGAAAAATCTAAGGAAGGCTCCCTATTACTAAGTGTGAGCCAAAATCCATATCTATGTGAACATAGTCAATGCAATGAGAAGGAAAAGGAAAAGAAAAACATTGTTGCACCCTTGGTAGCATCCGTCAGTGGAATTGTGATCCTTTTAGTAGTTGTGACAACAATATTATGGATGCTTAGAAGGAAAAAATCAAAAGCATTAATGGCAGAAAAGGGTGGAAATCAGATCTCACTGCAATACAAACAAGATGATTCATTCCTACAATTCAAAAAGCAAATATATCCATACACAGATGTTCTTAAAATCACCAATAATTTCAATAAAATTCTTGGTAAAGGAGGATTTGGTACTGTGTATTTTGGCTATATCGATGACACTCCAGTTGCAGTAAAAATGCTTTCATCATCATCTATTCAAGGTTATCAACAATTTCAAGCAGAGGGTCTCATATATGAATACATGGCCAATGGAAACTTAGAAGAACATCTCTCTGGTAAACATAGAAAACTAAAACTCTTCACATGGGAAGAAAGACTTCGTATAGCAGTGGATGCAGCCTTAGGACTCGAGTATCTTCAAAATGGTTGCAAGCCACCTATAATACATAGAGACATCAAATCTACAAATATCTTATTGAATGAAAACTTTCAAGCAAAATTATCTGATTTTGGTCTATCCAAAATTATCCCAACAAAAGGAGTAACTCACATGTCAACTATTGTTGCTGGTACTCCTGGTTATCTAGACCCTGAGTACTTCATAACTAATAGATTAACAGAGATGAGTGATATTTATAGTTTTGGTGTTGTTCTTTTAGAGATAATCACAAGTCAACCTGTGATAACAAGGAATGAAGAAAATATTCACATAAGTGCATGGGTTAGCTCCTTAATGGTAAAAGGAGATATAAAGGGCATTATTGACCCAATGTTAAAAGGTGATTATGATACTAATTCAGTTTGGAAACAACAGCTTGTTTGTCTCAAATCTCAACAAAGGCCAAACATAAGTGTAATAGTGATTGAATTAAAGGAGTGTTTAGCAATGGAATTATCTCGAACTAAATATACCAGTGCTGATACAAGAGATATCATTAAACCAGTCACCATGAATCTGAATACTATATTTGTCCCCCAGGCTAGA	2526	0.3488	SLTLTILIRAQDQSGFISIDCGATTDAIYTESTTGINYTSDANFINTGVSGKITPELKNGYQRPYESVRSFPEGIRNCYKINITRGSKYLIKIGFLYGNYDGLNVLPKFDLLLGANLWATVNINNAFLFQRNEIIYVPSQDYIQICLVNTGHGTPFISAIELRTLTNDIYVTESGSLETFYRGDLGSNIGYRYKDDVYDRFWSVGNKNEWKKLSVSINSADLDQNIYKPPTIVMSTTVTPTNVSAPLVINWEPNNPVDQFYVYLYFMEIEVLAMNQTREFNIIENGKSRYSNFSPKYGLVTTLYSSSSSSGKEIIYTIEKTKNSILPPIMNAIEIYKVLDFPQPNTFQGDDEAITTIKLVYRVIRDWQGDPCAPIDYLWHGLNCSYHEKESLRITSLNLASSGLSGKIDPSISKLTMLEKLDLSNNSLNGEIPSFLSQLQQLKILNLEKNNLSGSVPLALIEKSKEGSLLLSVSQNPYLCEHSQCNEKEKEKKNIVAPLVASVSGIVILLVVVTTILWMLRRKKSKALMAEKGGNQISLQYKQDDSFLQFKKQIYPYTDVLKITNNFNKILGKGGFGTVYFGYIDDTPVAVKMLSSSSIQGYQQFQAEGLIYEYMANGNLEEHLSGKHRKLKLFTWEERLRIAVDAALGLEYLQNGCKPPIIHRDIKSTNILLNENFQAKLSDFGLSKIIPTKGVTHMSTIVAGTPGYLDPEYFITNRLTEMSDIYSFGVVLLEIITSQPVITRNEENIHISAWVSSLMVKGDIKGIIDPMLKGDYDTNSVWKQQLVCLKSQQRPNISVIVIELKECLAMELSRTKYTSADTRDIIKPVTMNLNTIFVPQAR	842

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g01872	842	SMART	serkin_6	565	787	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g01872	842	Pfam	Protein tyrosine and serine/threonine kinase	610	741	IPR001245	GO:0004672\|GO:0006468
	Pste3g01872	842	Gene3D	Phosphorylase Kinase; domain 1	548	618	-	-
	Pste3g01872	842	SUPERFAMILY	L domain-like	378	460	-	-
	Pste3g01872	842	SUPERFAMILY	Protein kinase-like (PK-like)	548	801	IPR011009	-
	Pste3g01872	842	Gene3D	Ribonuclease Inhibitor	355	469	IPR032675	-
	Pste3g01872	842	ProSiteProfiles	Protein kinase domain profile.	565	797	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g01872	842	Pfam	Malectin-like domain	19	338	IPR024788	-
	Pste3g01872	842	PANTHER	OS07G0107800 PROTEIN-RELATED	17	808	-	-
	Pste3g01872	842	ProSitePatterns	Protein kinases ATP-binding region signature.	571	592	IPR017441	GO:0005524
	Pste3g01872	842	Gene3D	Transferase(Phosphotransferase) domain 1	619	829	-	-
	Pste3g01872	842	FunFam	Leucine-rich repeat receptor-like kinase	352	482	-	-
	Pste3g01872	842	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	661	673	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g01872	Pste-Chr3	12502118	12506477	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g01872	6	842	Receptor kinase-like Gene Family	AT1G51800	46.136	0.0	768

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Pste3g01872		Malectin_like	4.3e-108	CL0202