Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01850 ACATGAGTGAGGCATAATAGAAGTAATAGTTCGAGAGAGAGAAAAAAAAAAACCAGATAGCATAGGCCATTGACAGTGGAAGAGGGCATATATTATAACAAGTAGGACCAAAGGGGTTGTGAAAAAATTGTGATAAGAGGTTAATTATTATCATGGGGAAAGGAAGAGCACCATGCTGTGATAAGTCTCAAGTGAAGAGAGGTCCTTGGAGCCCTGCGGAAGACCTTAAACTCATAGCCTTCATCCAGAAATATGGCCATGAAAACTGGCGTGCTCTCCCAAAACAAGCAGGGCTTCTGAGATGTGGAAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGGCCTGATGTGAAGAGAGGCAATTTTACACCAGAGGAAGAGGAAACCATAATAAGGCTACACAAGGCCTTGGGAAACAAGTGGTCAAAGATTGCATCACGTTTGCCTGGTAGGACTGATAACGAGATCAAGAATGTGTGGAACACTCACTTAAAGAAAAGATTGGCTCCCAAAAAAGGTTCAGAATCACCAAGTACAGATGAATCCAAGCCAGAATCGTCAATAACTTCCTCCTCTTCCTCTTCATCTGAATCATTTTTCTCTAATGAGAGACCAAGTTCACCAAAGACCACAACCCCTGATAATAATGAATTTAATGACCATGTTGAGAAATTATCCATGGAAGATAAAATGGAGCAGGATTCAGAAAAACAAGTGTCCGATGAACTCATTGGCATCACTGAGGATCCAAAAGAGTCATCAGTTTCATTATCTTCTGATGAGTCAAATATTGTAAATCCAAGCCTAATTGTTGCACACAACAAACCAGAAGCACAATTAGCCTCTCCATTATCCTACCAAGGGCCTTATGATGTTGGAAGTGTATTAGAAGAGGTGGATAAACCAAACCACCTGATTGAAATTCCATGGGAGTCAGATTATGATTTTTGGAAGTTGTTAGATGATGATAGCATTGGATCTTTTCAATCAAATGAAGTCCAATTAGGTGAGTTCCCAGCCATCCAAAACACTACTCTAGGAGAAGAGTGTGTTCAAGTTGCTGAAGCCAAAAAGTGGTCCCAAGATTTTGAGAATGAGTTTGGAGTAGTAGGTGAGATAAAGGAGTCAAACAAGGATCATTTCCCACCAAAGAACTATGCAGTTGATCAAGAAATGGACCATACTCAGACATTTGATTTCGATGGATTGACAAGTGCAGAATCTGTATTAGACTTTGGTTATATCCAGTTATGGCCCTCTTGGCCTCAAAATAATAATAATAACAATAATACTAGTATGATGGGTTTTATGTATTACCCCCAAGATCAAGTTAGAACAGGTTGTAGATTGAAGCACAAATATGCAGTG 1370 0.3949 MGKGRAPCCDKSQVKRGPWSPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTPEEEETIIRLHKALGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLAPKKGSESPSTDESKPESSITSSSSSSSESFFSNERPSSPKTTTPDNNEFNDHVEKLSMEDKMEQDSEKQVSDELIGITEDPKESSVSLSSDESNIVNPSLIVAHNKPEAQLASPLSYQGPYDVGSVLEEVDKPNHLIEIPWESDYDFWKLLDDDSIGSFQSNEVQLGEFPAIQNTTLGEECVQVAEAKKWSQDFENEFGVVGEIKESNKDHFPPKNYAVDQEMDHTQTFDFDGLTSAESVLDFGYIQLWPSWPQNNNNNNNTSMMGFMYYPQDQVRTGCRLKHKYAV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01850 406 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 197 - -
Pste3g01850 406 Gene3D - 70 142 - -
Pste3g01850 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pste3g01850 406 MobiDBLite consensus disorder prediction 114 209 - -
Pste3g01850 406 SMART sant 68 116 IPR001005 -
Pste3g01850 406 SMART sant 15 65 IPR001005 -
Pste3g01850 406 FunFam MYB transcription factor 70 145 - -
Pste3g01850 406 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Pste3g01850 406 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pste3g01850 406 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Pste3g01850 406 MobiDBLite consensus disorder prediction 130 165 - -
Pste3g01850 406 Gene3D - 16 68 - -
Pste3g01850 406 CDD SANT 71 114 IPR001005 -
Pste3g01850 406 MobiDBLite consensus disorder prediction 114 129 - -
Pste3g01850 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pste3g01850 406 MobiDBLite consensus disorder prediction 166 198 - -
Pste3g01850 406 CDD SANT 18 63 IPR001005 -
Pste3g01850 406 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pste3g01850 406 FunFam Transcription factor RAX3 9 69 - -
Pste3g01850 406 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01850 Pste-Chr3 12220773 12223810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01850 1 319 MYB Transcription Factor Family AT1G79180 44.225 2.68e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste3g01850 Myb_DNA-binding 2.5e-13 CL0123