Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01817 ATTACCACAATGGAACAACAACCTGCACTCTTACAAGACCCAACTTTCCCTCTCTTCAAAACCCCTCGCAAAACCCCTTCACTCGCCGTAACTACCACAGTAAACCCTAACTCCCACGCAGAGCACCGGGAAATCGCTGCCGCATCCGCCGATGACACCACCGCTGCAGAGACGTTCGCCGACCTCGGCCTGGCGGAATGGGCGGTGAACACGTGCCGCGAGCTCGGGATGCGGAAGCCGCGGCGCGTGCAGCGCCGCTGCATCCCGCGCGTGCTGGAGGGTCGCCACGTGCTCGGCATCGACGAGACCGGGAGCGGGAAGACGGCGGCCTTCGCGCTCCCAATCCTGCACCGCCTCGCCGAGCACCCCTTCGGTGTGTTCGCCCTCGTCGTGACACCCACGCGCGAGCTCGCGTTCCAGCTCGCGGAGCAGTTTCGCGCCCTCGGCTCCGCCGTGCACCTCCGCATCGCGGTGGTCGTCGGCGGCATGGACATGCTCAAGCAGACGAAGGAATTGGCCGCTCGGCCGCACCTCGTCATCGCCACCCCTGGGAGGATCCATGCCTTGCTCCATGGTAACCCTGACATTCCCCCTGTTTTCTCCAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTCCTCGATGTTTGTTTCCAGGAGGAATTGAGATTTCTCTTTCAGTGCTTACCAGAAAATCGACAAAATTTGTTCTTTTCTGCAACAACTACAACTAATCTGCAAAAGTTGCGTGAACGTTACCAAGATAAGATGTATGTCTATGAGGCTTATGAAGGTTTTAAAACAGTTGAAACACTTAAGCAACAGGCTATTTTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATTTTGTCTAAAATGGAAGATACAGGAATTCGGTCTGCCATCGTATTTATCTCAACTTGCAGAGATTGTCATCGTTTAAGTTTGATGTTGGACGTGCTTGATCTAGAAGCAGCAGCTCTTTATTCATTCAAATCACAAACTCAGCGGCTTGAAGCACTTCATCAATTCAAATCAGGGAAGGTTTCTATACTACTAGCAACTGATGTTGCTAGCCGTGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGACGTTCCAAGGTTTCCACGAGATTATATTCACCGTGTAGGTCGTACAGCAAGAGCAGGTAGAGGGGGGTTGGCTTTGAGCCTTGTGACCCAGAATGATGTTGATCTTATTCATGAAATAGAAGCGCTTATTGAGAAGCAACTTGAAATGATTGAATACAAAGAAAGTGAGGCACTTTCTCTTATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAAAATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAAACAGAAGCTGAAAATGCTAGCAGAGAAAGGACTGTTAAAGAAAAGAAGCAAAAAGAGAAAACGAAATAAAGAATTCACAGAGGAAGGGAAGGAACAAATAAAAGAGGTGGAAGCACTGCATTACGCTCTTTTTTGTCATCCAGTGATTGACTTTATTTTATTGTGCCTTATTGACTGTGGCCTTTCTCTATTATGGGCTATGTTAAGCTTTTTAGCTTCCAAATTTTTAGAAATGTTCAATTGACGAGTTTGTTTTGATGTTTGTGCAGGTTTTCAGTGCTAAGAAGGAGGTGGAAATGAAGGTGATGGATGACGGTGGCATTGATGGGAAAGCAAAAGAGGGGGGAAACCAAAAACTGAAAATGGCAACAGAGAAAGGTTTGTTAAAGAAAAAGAAATTAAAAGAACGAAATAAAGAATTTGCAGAGGAAGGAAAAACAGAGAAAACAGGAAGTAGAAGCATTAGCAGATATAACAACTGCAAAGAAAAGGAGTAAGAAGAGACAGTAAATTAGTACATTTAAGGAATTAATACTTAAAAGATGATTTTTGAGTATGAAAACGATATTCGACGAGAAGGGCTTAATAAGTGGTTAAAATCAAAGCAGAAAGAGAAGAGCTTAATAAGTGGTTAAAATCAAAGCAGAAAGAGAAGAGAGTGATCATTGTCTTTCAAGGATGGCAGATTTTGATTGTCAGAGTAGACGCGAGATTAATGCATTAGATCCCAGGAGTTTAATATTTGAACAGGCAGTTCTCCATGGAATCTCATGTGATGTCTTTTATCTGATTTGGATTTTATGGGATGTATATTTTTGCCTCTTTTTATTTATTGAAAATCTTTGATTTTGATTCTTGAGGCCAAAACAGGACCAAAACACAGTTTGCAAAAACATTCCTAGCCATTGAAGAGGCAGGGAACAATTTTTTACTGTGGCCAATTACATAAACTGCTGATTTAGCTTCTAGCTTCGGTAAATTCATAGTTGAAAAAATTGTCATTTTTGTTAAGTTAATGAATTTGTTGTATTACTACTTGTTATTCTTTAA 2447 0.4307 ITTMEQQPALLQDPTFPLFKTPRKTPSLAVTTTVNPNSHAEHREIAAASADDTTAAETFADLGLAEWAVNTCRELGMRKPRRVQRRCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRIAVVVGGMDMLKQTKELAARPHLVIATPGRIHALLHGNPDIPPVFSRTKFLVLDEADRVLDVCFQEELRFLFQCLPENRQNLFFSATTTTNLQKLRERYQDKMYVYEAYEGFKTVETLKQQAIFIPKKVKDVYLMHILSKMEDTGIRSAIVFISTCRDCHRLSLMLDVLDLEAAALYSFKSQTQRLEALHQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIHEIEALIEKQLEMIEYKESEALSLMKKVFSAKNVAEMKMIDDGFEEKAKERKKQKLKMLAEKGLLKKRSKKRKRNKEFTEEGKEQIKEVEALHYALFCHPVIDFILLCLIDCGLSLLWAMLSFLASKFLEMFN 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01817 546 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 57 85 IPR014014 GO:0003724
Pste3g01817 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 415 IPR027417 -
Pste3g01817 546 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 288 435 IPR001650 -
Pste3g01817 546 SMART helicmild6 315 396 IPR001650 -
Pste3g01817 546 CDD DEADc_DDX49 59 262 - -
Pste3g01817 546 Gene3D - 268 507 IPR027417 -
Pste3g01817 546 CDD SF2_C_DEAD 273 405 - -
Pste3g01817 546 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 88 261 IPR014001 -
Pste3g01817 546 Pfam DEAD/DEAH box helicase 82 250 IPR011545 GO:0003676|GO:0005524
Pste3g01817 546 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 207 215 IPR000629 -
Pste3g01817 546 Pfam Helicase conserved C-terminal domain 290 396 IPR001650 -
Pste3g01817 546 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 40 498 - -
Pste3g01817 546 SMART ultradead3 76 276 IPR014001 -
Pste3g01817 546 Gene3D - 25 261 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01817 Pste-Chr3 11768233 11773955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01817 49 425 Eukaryotic Initiation Factors Gene Family AT3G19760 28.760 1.72e-51 179