Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01800 AAGCCATGATATCTGTAAGTGAGTTCTTGTATCAACTTTATGCGAAGATAATAGTCCTCTTAACATACATGCTAATAGAACTTATCCTCGTCATTCGGTACCTAAAGTCAGATACACGTCCAATTTCAACCACCCAATACCTAAATTTCATAGAAGAGAAGAACCCCACAATTTGTTACAGTAGAAGGCTGAAGAGTGAGCACATAGACTGCAGAGTGTGCTTATCCGAATTCCAGGAAGGGGATAAGGTGAGGAACCTCAACTGCAGACACACATTTCACAAGGATTGCTTGGACCAGTGGTTGCAGCAATACTATGCTACTTGCCCACTTTGCAGAAACAAGGTGTTGCCAGATGATGTTGTGGCCAACTTCAACATGCTTCACAATCAGGTAGAATATGATGGAAATGATGACCAGCTTATCTTTTTGTTATCTGCGTTAAGGGTACCACTTTGCACACATATCTCTGATCTAATTGCATATACACAGGGATTTCTTCCTCCCCTTCTGGGATCCAATATTCATGCTTCCTTAGATTTTTATTCAAGTCCCCACAAGGCAGAGCTAGTCACATGCAATGCAAGATCACACAAATTAGGTGTCTGCACTTTGGATACCTTTTACTTACCACTTTATACACAGAAT 647 0.408 MISVSEFLYQLYAKIIVLLTYMLIELILVIRYLKSDTRPISTTQYLNFIEEKNPTICYSRRLKSEHIDCRVCLSEFQEGDKVRNLNCRHTFHKDCLDQWLQQYYATCPLCRNKVLPDDVVANFNMLHNQVEYDGNDDQLIFLLSALRVPLCTHISDLIAYTQGFLPPLLGSNIHASLDFYSSPHKAELVTCNARSHKLGVCTLDTFYLPLYTQN 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01800 214 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Pste3g01800 214 Pfam Ring finger domain 68 111 IPR001841 -
Pste3g01800 214 PANTHER - 1 152 - -
Pste3g01800 214 SMART ring_2 69 110 IPR001841 -
Pste3g01800 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 116 IPR013083 -
Pste3g01800 214 SUPERFAMILY RING/U-box 47 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01800 Pste-Chr3 11639937 11641077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01800 68 122 C3H Transcription Factor Family AT1G15100 56.364 6.82e-19 78.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01800 3 11639937 11641077 Pste3g01800 3 11639937 11641077 ECH