Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01799 GTTATAACGACCCGTCAATGGTCAACCTCAACCCTTTCATGCGAATGCAATTTCCAGTCTCCTTATTACACTAATTTTCTTCTAACTTTCTCTCCGTTTACATAATGATGGATTCTTCTCCTCTTATTCCTCCTTCACCGGTCACCGAGATCGACCTCGAAGCCGCTTCCTCCGATCAAATTCAATGCAGGATTTGTCTTGACACTCATGGTAAAGATTTTATAGCTCCTTGCAAGTGCAAAGGTACGTCAAAGTATGTACATCGAGAGTGTTTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATATAATTTGCGTGTTCATGGTGATAGAAAATGGCGTGCTTTCAAATTTCGGTTTTTTGTAACCCGGGACATTTTGTTTATATTTCTGGCTGTACAGCTTGTCATTGCTTCACTGGCTTATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTATCTTCATCTTGTTTGGGGTTTTGGTAGTGAGCTGAGCTTTTACTATATATGTGGAGCACTGTTGTTTTTTGTGTTGCTTGGCCTGTCTGGGTGCTTTATCACTTGTTATGATCAAAGAGTTCTTAGTAATGATTTGACCCAGCCTTGTCGAGAAATATGTCTTTGTTGCTGTCAGCCCGGAATTTGTACTGACTGTCATTTGCATGGTACTCTTTGTACATTGGTCGATTGCAATGCATGCTGTGAGGGTTGTGGAAACATGGTAGCTGAATGTGGTAGTTGCATGAGAGGAGGCTCTGAGGAAGCAGGGCTACCATTCTTTTGCATAATGGCTTTGATTTTTCTGGTACTCTTTACTGTACTTGGGATTTTTTACAGTGTATTAGTTGCTACAATGGTAGGACAACGGATATGGCAGCGTCATTATCACATACTTGCAAAAAGGATGCTAACAAAGGAGTATGTAGTTGAGGACATTGATGGACAGATAACAGGGCCTAATTGGACTCCTCCATCCCTCCCAGCGGAGGATGTACGGCAGCTGAGAACATTGGGCCTCCTATGAGTTTGAAGGAGTCTTCTACTTGCTGGGGAGAATGACATGACAGTATAGGTAAAACTGGTACCTTGCTTGGTTGTCTGGAAGATATGTAGTTAACTGATAAAATTCCTGAGCCACTTAGTGACTCGGCTCACATAGTTTTTAACTTGTATAATTGGTCTAGTATATCGAAATTTGTCAATTTCTTATGTATCTACAAATGTAAAGAAATGTGAGGGAATTTTAAAGAAATGACATGACACGGATTTTGTTCACAATCAGGTTATTGTTCACAATCTCTATGCTTGACATTTGCATTAAC 1356 0.4078 MMDSSPLIPPSPVTEIDLEAASSDQIQCRICLDTHGKDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYNLRVHGDRKWRAFKFRFFVTRDILFIFLAVQLVIASLAYLVYLIDGYQQYYLHLVWGFGSELSFYYICGALLFFVLLGLSGCFITCYDQRVLSNDLTQPCREICLCCCQPGICTDCHLHGTLCTLVDCNACCEGCGNMVAECGSCMRGGSEEAGLPFFCIMALIFLVLFTVLGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDIDGQITGPNWTPPSLPAEDVRQLRTLGLL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01799 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 88 IPR013083 -
Pste3g01799 317 ProSiteProfiles Zinc finger RING-CH-type profile. 20 82 IPR011016 GO:0008270
Pste3g01799 317 SMART ringv_2 27 76 IPR011016 GO:0008270
Pste3g01799 317 CDD RING_CH-C4HC3_MARCH 28 76 - -
Pste3g01799 317 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 15 316 - -
Pste3g01799 317 SUPERFAMILY RING/U-box 22 80 - -
Pste3g01799 317 Pfam RING-variant domain 28 75 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01799 Pste-Chr3 11618542 11623369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01799 2 317 C3H Transcription Factor Family AT2G22120 75.155 1.18e-171 479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01799 3 11618542 11623369 Pste3g01799 3 11618542 11623369 ECH
Pste3g01799 3 11618542 11623369 Pste7g02293 7 21212162 21218811 PCT