Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01790 AGCATGGACGTTCCATCTTCACAGTTTGTTTTCTTGAGAAGGATGTGTGTGTATGATCCTATGCACCAAATTAGCATGTGGGAGGAAAATTTCAAAAGCAATGATCATAATAATTTAACTGCTTCCACATCTATAATAGAGGAAGCGGACATGAAGTTACATAATCAGGTTCAGATGCAATCCGAGGATGCTTCGCACGGAATATTGGTAACCACTATGAAGTATAACCATGATGCTAACAAACTTAATGATAAGACACAAAGACGTCTTGCACAAAACCGAGAGGCTGCTCGCAAGAGTCGTTTGAGGAAAAAGGCATACGTGCAGCAGTTAGAATCATGTCGTTTGAAGCTGATGCAGTTAGAGCAAGAGGTAGATCATGCAAAACAACAGGGATTCTATATTGGTGACGGATTGGGTTCTAATAATTCTGGTTCTGCAGGCTCTGTAAATTCAGTTTTCCTTTTCCAACTATTTTTGTACTCTAAAAATACCGAATTTACAGGAATAACGATTTTTAAGATGGAGTATGGACATTGGGTGGAGGAGCAAAATAGACAAATCTTAGAACTGAGAACTGCTTTAAGTTCTCAGATGGGTGACATACAACTCGGGACACTTGTACAAAGCATAATGAACCACTACGCTAAACTCTTTAGCATGAAATCAGCTGCTGCAAAAGCAGATGTTTTCTATGTTATGTCTGGTATGTGGAAGACGACAGCTGAGCGATTTTTCTTGTGGATTGGAGGATTTCGCCCTTCTGAACTTCTAAAGGTTCTGGTCCCTTTGAGTGAACCTTTGACAGAGCAACAACGGTTTGATGCCTATGGCCTTGAAAAGTCGTGCCAGCAAGCGGAAGACGCCCTTTCACAAGGTATGGAGAAACTTCAGCAAATGCTTGCTGACAGTGTAGGACCCGGACAACTAGTTGAAGGAACTTCCATGGATACTGCAATGGAGAGGATGGAAGCTCTTGTTAGCTTTGTGAACCAG 996 0.4157 SMDVPSSQFVFLRRMCVYDPMHQISMWEENFKSNDHNNLTASTSIIEEADMKLHNQVQMQSEDASHGILVTTMKYNHDANKLNDKTQRRLAQNREAARKSRLRKKAYVQQLESCRLKLMQLEQEVDHAKQQGFYIGDGLGSNNSGSAGSVNSVFLFQLFLYSKNTEFTGITIFKMEYGHWVEEQNRQILELRTALSSQMGDIQLGTLVQSIMNHYAKLFSMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLVPLSEPLTEQQRFDAYGLEKSCQQAEDALSQGMEKLQQMLADSVGPGQLVEGTSMDTAMERMEALVSFVNQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01790 332 SMART brlzneu 81 141 IPR004827 GO:0003700|GO:0006355
Pste3g01790 332 Coils Coil 104 131 - -
Pste3g01790 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 88 103 IPR004827 GO:0003700|GO:0006355
Pste3g01790 332 Pfam bZIP transcription factor 84 113 IPR004827 GO:0003700|GO:0006355
Pste3g01790 332 Coils Coil 283 303 - -
Pste3g01790 332 Gene3D - 84 133 - -
Pste3g01790 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 83 113 IPR004827 GO:0003700|GO:0006355
Pste3g01790 332 SUPERFAMILY Leucine zipper domain 85 126 IPR046347 GO:0003700|GO:0006355
Pste3g01790 332 ProSiteProfiles DOG1 domain profile. 170 332 IPR025422 GO:0006351|GO:0043565
Pste3g01790 332 PANTHER TRANSCRIPTION FACTOR TGA9 14 332 - -
Pste3g01790 332 Pfam Seed dormancy control 188 262 IPR025422 GO:0006351|GO:0043565
Pste3g01790 332 FunFam BZIP family transcription factor 84 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01790 Pste-Chr3 11556809 11559988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01790 2 332 Calmodulin-binding Proteins AT5G10030 58.333 1.07e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pste3g01790 DOG1 1.2e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01790 3 11556809 11559988 Pste3g01790 3 11556809 11559988 ECH
Pste3g01790 3 11556809 11559988 Pste7g02290 7 21179632 21185570 PCT