Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01736 ATGTCCTGTGCCTCCCCATTTCATAATTTCCCTCTCTCTCTCTCTGTTCTCTCTCACTCACTCTCTAACATTTCAATGGCACCGATGAGTCTCCCACCTGGGTTTAGGTTCCATCCCACTGATGAAGAGCTTGTTGCTTACTACTTGGAGAGAAAAATAACAGGTCGTTCAATAGAGCTTGACATCATTGCTGAAGTTGATTTATACAAGTGTGAACCTTGGGATTTGCCAGATAAATCATTTCTTCCAAGCAAGGATATGGAGTGGTACTTTTACAGTCCTAGAGACAGAAAGTACCCAAATGGGTCAAGAACTAACCGTGCAACACAAGCTGGATACTGGAAAGCTACAGGGAAAGATAGGCCAGTGCACTCTCAAAAGAAGCCAGTTGGCATGAAGAAGACATTGGTTTACTATAGAGGAAGAGCACCACATGGGATTAGAACCAATTGGGTTATGCATGAATATCGTTTAATCGAATCAGTTCCTGGAGCTGCTCTTTCATCTTTGAAGGTAATCAATAAAAGATAA 531 0.42 MSCASPFHNFPLSLSVLSHSLSNISMAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKPVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESVPGAALSSLKVINKR 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01736 176 FunFam Nac domain-containing protein 86 40 171 - -
Pste3g01736 176 Gene3D NAC domain 40 172 IPR036093 GO:0003677|GO:0006355
Pste3g01736 176 SUPERFAMILY NAC domain 21 163 IPR036093 GO:0003677|GO:0006355
Pste3g01736 176 Pfam No apical meristem (NAM) protein 32 158 IPR003441 GO:0003677|GO:0006355
Pste3g01736 176 ProSiteProfiles NAC domain profile. 31 175 IPR003441 GO:0003677|GO:0006355
Pste3g01736 176 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 30 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01736 Pste-Chr3 11146335 11147029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01736 26 167 NAC Transcription Factor Family AT1G54330 80.986 3.97e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g01736 NAM 2.1e-40 No_clan