Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01681 AATTATAGGGTTTGTATTACTATTGCAAATACGCAGCAGCACCTATCCTCGTCTGGAAAGACTGAAAAGAAATTCGGAATTCAGCTGAAGAACGTTCCACAGTCAGTGTCTTCTTCACAAGAGGAATCCGAGGAAGCGATGGATTTCGACGAGTACGAATATCTGGAGAAAACAGTGGAAGAGGACATAGACTCCTCTAAGAAGAAGAAGGATATAACTGATAAGAGCGAGAGGAGTTACCGGAAGCGCGACGTTGACGATGATCTTGACGCCGATGATCGGAGGAGCAAGAGGTCAAGGGGCGACGAGGAGAACGGTGGTTCCAAGAAGGATCGGGACCGTGACCGGGACCGCGACCGCGACCGCGACCGCGACCGCCGTCACAGGAGCGAGAGGGAGAGAGATGGAGAGAGGAAAGAGAGGGATAGAGATAGGGAGAGGAGGGATAAGGATAAGGATAAGGATAAGGATAAGGATAGGAGAGACCGTGACAGGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAGCGCGAGAGAAGAGAAAGGGATAGGGAGCGAGAGAAGGAGAGAGAGAGATCCAGAAGGAGCAGGAGTCGCTCCGAGAGAGACCGAGACAGGGAGCGAGATTTCGAAATTCGCGATGGCCGGAGATTTAGAGATAAGAAAGAGGCTGTGGAACCGGAGGCAGATCCTGAAAGGGATCAAAGAACTGTGTTTGCCTACCAGATGCCGTTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTCATCATGGATAGGAATTCAAGACGATCTAAAGGAGTTGGGTATGTGTTTTATTATCAAATAATTTCTTGTTTATGTGTATGTGCTATTGTGGTATTAGGATATCTACTTCCAGGAATCATGCTTAACTGTATCTTTAAATGGACTAGCAATGCGATAATGATGAGGGATGGTGGGAATACCTTGCACTCATGTTTAATCAATTCATGCTGCGCACTCAAGGTAGATGACATAATCCTAGTTTTTTGTTTGGTCCTATTCCCAATTTTCTTCCTCTGCTTGTCATACAATGAGGATTTCATTTGTATGCTGATGACCCTTTTGGTTTATTTCCCTCCTTTTATTAATTGGAAGTCCCTTTTATCAGTTGGGGAGCTTGATAAGGTTGATATGGAGGAAATTTTACTCTCCAACTCTCTTCCTCCCTCCCCCCTCTCTCTCTCTTCACTCTTTAAGTTTTTAGTGAGAGCTACTATAATTACTGTCCAAGGCCAGATGGCAGTTTTAGTTGGGTTTCTTTTCTTAGGGTTTGATTTGCATGTGTATGCACAATTACATATATTGGCAATGGATATGCACTTACTGTTGCTAATCCTGTCTCTTCATGTCTCAATGGTTTCCTATCTCTATTCTCATATGGCTAACATTTACTTTACAAGTCCGATACATCAAATGAAACTCAGCTTGAGCTGTTCTGAAAGCTTGATGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCTATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTAATGGTGAAGCCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCTGGTGGAGCAGCTGGTGTAGCTGGGCCCTATGGAGCTGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACCGAGAGTCAGCTGCGGGAGATTTTTGAACCATTTGGTCCTGTCGAGGTTGTCCAACTGCCTCTTGACTTGGAAACGGGACACTGCAAGGGTTTTGGCTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATGTGTGACGGATCATGTTGGGGGCCAAGACACAACTGCTAAATCTGCAGACTTAGATGATGATGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCAATGCTTATGCGGAGGCTGGCTGGCACTGACATTCCTGAAAGCATAGGTATGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCCATTAGCTTACCTATTGGTGCACCCGTTCTACCAGCCCAAGTAATGCCTACTGCAGTGGTAGAACCTGTAGGAAACCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCGAGCACTGAGATGGAACCAGATTTTGATGTTGACATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAGTATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTGCGGGTTTTGTGTATTTGCGGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAACGTGCTATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCCATCTTCATGCAACCACAGTTATATGAAGCCAAGTTTAGAGAGGACGACTGAAGTTCACACGCCTTGAGGCTTGTGAAGATACAATATGCATAATTTTCTGATCTTAGTTTTCAAACATAAGTTCTAGTTTATATATAGATTTTGATTCATGAAATTGTATTAGATGTATGATTGCAGAAATGGTAATGACCTGATATTTATGATCAGTTTAAAGTTGCGCATGCCAATGTATTTTAACAATCATGCCATGCAGTTTCATTTGTTCTGTACCGTAGAATATATATTTTATTTTTTAGCCTTTTATTCTTGTTTTAAAGTTCTTT 2735 0.4307 NYRVCITIANTQQHLSSSGKTEKKFGIQLKNVPQSVSSSQEESEEAMDFDEYEYLEKTVEEDIDSSKKKKDITDKSERSYRKRDVDDDLDADDRRSKRSRGDEENGGSKKDRDRDRDRDRDRDRDRRHRSERERDGERKERDRDRERRDKDKDKDKDKDRRDRDREKEKEKEKEKEKERERRERDREREKERERSRRSRSRSERDRDRERDFEIRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVFYYQIISCLCVCAIVVLGYLLPGIMLNCIFKWTSNAIMMRDGGNTLHSCLINSCCALKVDDIILVFCLVLFPIFFLCLSYNEDFICMLMTLLVYFPPFINWKSLLSVGELDKVDMEEILLSNSLPPSPLSLSSLFKFLVRATIITVQGQMAVLVGFLFLGFDLHVYAQLHILAMDMHLLLLILSLHVSMVSYLYSHMANIYFTSPIHQMKLSLSCSESLMYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGGQDTTAKSADLDDDEGGLTLNAHSRAMLMRRLAGTDIPESIGMPVVNGSVPAQQAISLPIGAPVLPAQVMPTAVVEPVGNPSECLLLKNMFDPSTEMEPDFDVDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFETVEAASAAQRAMHMRWFARRLISAIFMQPQLYEAKFREDD 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01681 820 CDD RRM3_RBM39_like 725 807 - -
Pste3g01681 820 MobiDBLite consensus disorder prediction 43 58 - -
Pste3g01681 820 Gene3D - 163 293 IPR012677 -
Pste3g01681 820 Gene3D - 558 653 IPR012677 -
Pste3g01681 820 SUPERFAMILY RNA-binding domain, RBD 723 807 IPR035979 GO:0003676
Pste3g01681 820 Coils Coil 156 194 - -
Pste3g01681 820 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 562 640 IPR000504 GO:0003723
Pste3g01681 820 SMART rrm1_1 239 313 IPR000504 GO:0003723
Pste3g01681 820 SMART rrm1_1 727 804 IPR000504 GO:0003723
Pste3g01681 820 SMART rrm1_1 563 636 IPR000504 GO:0003723
Pste3g01681 820 NCBIfam splicing factor, CC1-like family 500 816 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pste3g01681 820 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 286 IPR000504 GO:0003723
Pste3g01681 820 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 749 802 IPR000504 GO:0003723
Pste3g01681 820 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 564 634 IPR000504 GO:0003723
Pste3g01681 820 FunFam Splicing factor CC1-like 545 651 - -
Pste3g01681 820 MobiDBLite consensus disorder prediction 59 208 - -
Pste3g01681 820 FunFam Splicing factor, CC1-like protein 721 820 - -
Pste3g01681 820 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 655 744 IPR029123 -
Pste3g01681 820 Gene3D - 722 820 IPR012677 -
Pste3g01681 820 MobiDBLite consensus disorder prediction 32 208 - -
Pste3g01681 820 SUPERFAMILY RNA-binding domain, RBD 561 640 IPR035979 GO:0003676
Pste3g01681 820 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 286 IPR000504 GO:0003723
Pste3g01681 820 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 504 817 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pste3g01681 820 CDD RRM2_RBM23_RBM39 564 641 - -
Pste3g01681 820 SUPERFAMILY RNA-binding domain, RBD 229 291 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01681 Pste-Chr3 10650814 10657353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01681 518 635 Eukaryotic Initiation Factors Gene Family AT4G34110 36.134 1.13e-07 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01681 3 10650814 10657353 Pste2g03676 2 40067890 40079297 ECH
Pste3g01681 3 10650814 10657353 Pste3g01681 3 10650814 10657353 ECH
Pste3g01681 3 10650814 10657353 Pste2g03676 2 40067890 40079297 PCT