Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01674 GTTTGTTGTTAATGGAGTAAGGTGAAGAAGAGTAGTGAACGGAAAGCGAAGATGGAAGAGACGAGCGTGGAAGATCTTCCTCAGAAAGAGGCACACATACTGAAGGGTCACGAGGGTGCCGTGTTAGCCGCGAGGTTCAACGCCGACGGAAATTATTGTCTGAGTTGCGGCAAAGACCGTACCATACGCCTCTGGAATCCCCACCGTGGCATCCATATCAAGACCTATAAATCCCACGGCCGCGAAGTCCGCGATGTCCACGTCACACCGGATAACTCTAAGTTATGTTCCTGCGGTGGAGATCGACAAATATTTTATTGGGATGTTGCGAGTGGGCGTGTAATTAGAAAATTTCGTGGCCATGATGGTGAGGTAAATGGTGTCAAATTCAGTGAGCATTCATCTGTTGTAGTCTCAGCTGGCTATGATCAATCGTTGCGTGCTTGGGACTGCAGATCCCACAGCACCGAGGCAATTCAGATTATTGACACATTTGCAGATAGTGTGATGTCTGTTTGCTTAACAAAAACTGAAATTATTGGAGGAAGTGTTGATGGAACTGTTCGAACATTTGACATTCGTATTGGCAGAGAAATATCCGATAACTTAGGGCATCCTGTCAACTGTGTTTCAATGTCAAATGATAGTAACTGCATTCTAGCTGGTTGCTTAGACTCTACACTGCGCCTTTTGGACAGGTCCACAGGAGAACTGCTGCAAGAGTATAAAGGACACACCAATAAGTCTTACAAATTGGATTGCTGCCTTACCAACACGGATGCTCATGTAACTGGTGGCTCTGAGGATGGCTTTATTTATTTCTGGGATCTTGTGGATGCATCTGTTGTTTCAAGGTTCAGGGCTCATACCTCGGTGGTAATTTCTTCTGTTTAGTTTATTCTTTCTGCAAGAAAGCTGTGCAAGGATGATACTAAAAGGAGATTTTAGGCATTTTCTTTTCTTCATTGATAATTTGACAGCTTCAAAATTTGAAGTCTTCCTTAAGCATCAATAAAGGAAACTGATGGCTTAATATAACCTTTTACAAAAAAGTGCTGTTTAATTATTATGAGTTTTCATTTAAACCTTATATGATTTTATTTTTTTTTGGACTGGGAAACCTTATATTATTTATCACTCATTCATCATTGTTTTAGTTGATTTCTCACTCTTTTGGCATTGTGTTGAGAGCCCAGTGTGAAAATTGTTATCCCAAACACTTCATCATTGAAATAATATGGTAACTTTATTCAAAACAAAGTTTCTCTATCTCAGAACTTCTCCATCAGTTGTTCCTGATGATACTTTCGTCTGCGGCTGATTATATTTACTGATTTACAATTTTACATTAACTTTGTTATTTTTCTTTAACTAATGTTTTCCTTATGCTATATTTTATTACTGTCAATTTCTAGTCTGGTGACAATGTCACCATTTTGTTCCAAAATTGTGTGAATGTTGCAGCAGGGGCGACGGCTTTTTGGGTTTATAATATCAATTGGTGTTTTACTTGTAGAGATGCAATATCTTTTATTTTAATAACAACTTGTTGAAGGACGTGAGAATGATATATTGTATGCGGGTTTTCTGTCAGGTAACAAGTGTTAGTTATCACCCAGAGGAAAATTGCATGGTAACTTCTTCTGTGGATGGCACCATTCGAGTGTGGAAGACATAAGAACAAAATGCAAGCACCAAGTTTATTTGCTGTGTCCATGCGCTCATACCAATACCAGTTAACATAATGATGATTACATGAAGTCCACAGAAACGATGTTCTGTTTTTATATAATATTCTTCGAAGAATTTGACCATGTGCGTTTTTTATATGGAAGATGGTAAAAGCAAAGTTAGTATATTGGTTG 1865 0.3861 MEETSVEDLPQKEAHILKGHEGAVLAARFNADGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTPDNSKLCSCGGDRQIFYWDVASGRVIRKFRGHDGEVNGVKFSEHSSVVVSAGYDQSLRAWDCRSHSTEAIQIIDTFADSVMSVCLTKTEIIGGSVDGTVRTFDIRIGREISDNLGHPVNCVSMSNDSNCILAGCLDSTLRLLDRSTGELLQEYKGHTNKSYKLDCCLTNTDAHVTGGSEDGFIYFWDLVDASVVSRFRAHTSVVISSV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01674 280 SMART WD40_4 218 259 IPR001680 GO:0005515
Pste3g01674 280 SMART WD40_4 94 133 IPR001680 GO:0005515
Pste3g01674 280 SMART WD40_4 10 49 IPR001680 GO:0005515
Pste3g01674 280 SMART WD40_4 52 91 IPR001680 GO:0005515
Pste3g01674 280 SMART WD40_4 179 215 IPR001680 GO:0005515
Pste3g01674 280 SMART WD40_4 138 175 IPR001680 GO:0005515
Pste3g01674 280 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Pste3g01674 280 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 142 IPR001680 GO:0005515
Pste3g01674 280 Gene3D - 3 280 IPR015943 GO:0005515
Pste3g01674 280 CDD WD40 13 278 - -
Pste3g01674 280 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Pste3g01674 280 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 17 49 - -
Pste3g01674 280 Pfam WD domain, G-beta repeat 14 49 IPR001680 GO:0005515
Pste3g01674 280 Pfam WD domain, G-beta repeat 219 259 IPR001680 GO:0005515
Pste3g01674 280 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Pste3g01674 280 Pfam WD domain, G-beta repeat 96 133 IPR001680 GO:0005515
Pste3g01674 280 Pfam WD domain, G-beta repeat 187 213 IPR001680 GO:0005515
Pste3g01674 280 PANTHER WD40 REPEAT PROTEIN 6 277 - -
Pste3g01674 280 ProSiteProfiles Trp-Asp (WD) repeats profile. 17 58 IPR001680 GO:0005515
Pste3g01674 280 FunFam WD repeat domain-containing protein 83 8 280 - -
Pste3g01674 280 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 96 - -
Pste3g01674 280 SUPERFAMILY WD40 repeat-like 9 278 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01674 1 276 Eukaryotic Initiation Factors Gene Family AT2G46290 25.887 2.05e-15 73.6