Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01672 CTTGTTTGTGAAGCTATTTGCATTGATCCACTCATCTCTCTCTCTCTCTCTCATTTTCTCTTAAAACCCACGTCCGTGCCCTTGAAGCTAAGAAAAAGAAACAGTGCAACCAAAGCTTCCTCCTACCTGTCTCTTTTCCTGTGTAGTTCTTTGTCTTCTTTCCTTTGTCCTTGAGAGGGTTCCATTTTGCGTAGCACAAAAGGTAGCAGAGTCAAAACCCTGCAGAGTGCTACAAAATGATGCCCAGCAATGGACAGTTAACTGTTCCTCCAGGCTTCAGGTTTCACCCTACTGATGAGGAGCTTCTCTACTATTATCTGAGGAAGAAAGTTTCTTATGAAGCCATCGATCTTGATGTCATAAGAGAAGTAGATCTCAACAAGCTTGAGCCTTGGGACCTCAAAGATAAATGTAGGATTGGCTCAGGGCCTCAGAATGAGTGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACAAGAACAAATAGAGCAACTACAGCAGGTTTTTGGAAAGCAACTGGAAGGGACAAGGCCATATACCACACTAATTCCAAGAGGATTGGTATGAGGAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATATTCAAGAAGATGGATGGGTGGTTTGCAGGGTCTTCAAAAAGAAAAACCAAAATAGAGGTTTCCAACAAGAAATTGAAGAAGAAGAACACATAACCCACATGAGAACAAGTGGTCCATGCCAGATTCTAGAGCCAAAACATCACATGCAAGGAGGCCTATATGATTACAATAACTTTGATGGAACAATGCACCTTCCACAATTATTCAGTCCAGAATCAGCTGTTGCACCAGCCACCACCTTGGCTTCATCCATGAATGCCATGGACATCCTTGAGTGCTCTCAAAACTTGTTGAGGCTCACAACAAATGGCTGTGGACTTAATCTCATGCAGCATCAAGGAGAGAGGTTCAGTGGTGATTGGTCATTCTTGGACAAGTTACTAGCATCACACCATGGCATGGATCATCAGCATCCACAAAGCAAGTGTAACCCTCATGCTACTCCTCAAGCTGCAAATTCTGTGGGCACTTCAGCTCAGAAATTTCCATTCCATTATCTTGGCTGTGACACTCATGATATTATGAAATTTTCCAAGTAGGGGCAGTGCATTTAAATGTGTTATACTTAAGCAAGGTGAGAAATATTTGGTTCCTAAGCATATGTAATATGTAGCTTCTTGTTAAATACTTATTCAGATTCCAC 1315 0.4236 MMPSNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDADIQEDGWVVCRVFKKKNQNRGFQQEIEEEEHITHMRTSGPCQILEPKHHMQGGLYDYNNFDGTMHLPQLFSPESAVAPATTLASSMNAMDILECSQNLLRLTTNGCGLNLMQHQGERFSGDWSFLDKLLASHHGMDHQHPQSKCNPHATPQAANSVGTSAQKFPFHYLGCDTHDIMKFSK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01672 324 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Pste3g01672 324 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Pste3g01672 324 MobiDBLite consensus disorder prediction 278 297 - -
Pste3g01672 324 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 239 - -
Pste3g01672 324 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Pste3g01672 324 FunFam NAC domain-containing protein 19 163 - -
Pste3g01672 324 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01672 Pste-Chr3 10553303 10556924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01672 6 324 NAC Transcription Factor Family AT1G79580 56.183 3.20e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g01672 NAM 2.1e-38 No_clan