Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01665 CTTCCTTCCAAATCCATGGACGCCGTCGATTCAACCCCTCCCTACGATCCCTCTCCTCAGACCCACGCGCCTCCACAGTATCCCAACTTGCAGCATCACCAATCCGAAACCAACGGCACCGTCACCAGCGACGCAAAACCACCTGAGAACAACAACGGTTCGCATCATCGCGAACCGAAACCATTGATCTCCGACGGGCTGAGGCAGAGCGGCCCCGACAGGGACCACTCCGGCGGCGAGGAGGAAACCACCAGCAAGCGGCGGCGGCGCAGCCGCTGGGATCCGCCGCCCGAGTCTAACGACCAGAGCGGCGGTGAAGGCGAACCGGGCACTGGGCCGAAGAAGAGGAAGTCTCGTTGGGCCGATGATGAGCCCAAGCCCGTGGTTCAGCTTCCTGATTTTATGGGTGGTATTGAATTCGATCCTGAGATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTAGAATGTTACAATCAGGTTTACCCTTAGATGATCGTCCTGAAGGGGCTCGATCCCCTTCACCAGAACCTATATATGATAACATGGGAATTAGGATTAACACTAGAGAATATAGAGCGCGGGAGAGATTGCAAAAAGAGAGACAAGAAATTATATCTCTTATTATAAAAAAGAATCCTGCATTTAAGCCACCTGCAGATTATAGGCCACCCAAGCTTCAGAAGAAGCTTTATATACCAATGAAGGAATACCCTGGTTATAATTTCATTGGGCTTATTATTGGGCCTAGAGGTAACACCCAGAAGAGGATGGAGAAGGAAACCGGTGCTAAAATTGTAATTAGAGGTAAAGGGTCGGTGAAAGAGGGCAGACTGCAGCAGAAGAGGGATTTGAAGCCTGACCCTTCGGAGAATGAAGATTTGCATGTTTTGGTGGAGGCTGAGACGCAGGAGTCGCTGGAGGCGGCTGCGGGTATGGTGGAGAAGCTCTTGCAGCCTGTAGATGAGGTGTTGAATGAGCATAAGAGGCAGCAGCTTAGGGAGCTTGCTGCGTTGAATGGGACGATCAGGGATGAGGAGTATTGCAGGCTGTGTGGTGAGCCTGGTCATCGGCAGTATGCGTGTCCTACTAGGACTTCGACGTTTAAGAGTGAGGTTGTGTGCAAGCATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCCGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAATTTTTTAGCGGAGTTGGGAGGTTCGGTTCCTGAGTCTGCAACAAAGCATGCCAGTACTTTGGCAATTGGTGCAGGCCCTTCTGGGAACAATCCTCCTTGGGCTAGCAATTCTGGGGCGGCTGGTGGTGCTCCTCAAGCTGGCTTAGGAGCTAGTGTGGTTAAAAAAGAAATTGATGATACAAATTTGTACATAGGGTATCTGCCACCCACTCTTGATGATGATGGCTTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATCAAGGATCGAGTGTCGGGTTTAAGTAAAGGATACGGTTTTGTGAAGTATGCTGATATTACGATGGCAAACAATGCTATCATGGCCATGAATGGATATCGCCTGGAGGGGCGAACCATTGCGGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTGCCTCCTGGCCCACCAGCATCTGCTGTTCCCACTTATCCTGTTCCAAGCCAGCAACTTGGTGCTTATCCATCCCAACAGTATGCTGCTGGTGGCCCCCTAGGGAGTGCTCCTCCTGTGAGTTATGGTGGTACACCAGTGCCATGGGGACCCCCTGTTCCTCCTCCATATGCTCCCTATGCTCCTCCTCCACCTGGATCAACTATGTATCCACCTATGCAAGGTCAACCTATGCCTTCTTATGGGGTTCAATATCCTCCTCCTGTGCAGACTGGCCCTCCCGGTGCCCCATCCCTGCCTGCAACTTCCAGTGAAATGCAACAGAGTTACCCTCCTGGAGTGCAGTCTGACAATGGTACCTCAACTCAGTCTGTACCAGTATATGGTAACATGGTACATTCAATGCCACCTGCGGCTCAACCTGCATATCCAGCATCTTATGGATATCCACCTTACTATAGTGCTGTTCCTCCACCACCTCCCCCTCCTGCCCCTAATCCGGTCGCAACTTCTGATCAATCCCACAACATTGCTAATGTGCCTTGGGCCAGTAATTCTCTAGTTCCACCTCCTGCTTCATCCGCAGACAAGACAACATATGGTGCAGATCAATCCCAAAGCATTGGAAATGTGCCTAGAGCCACAAATCCACCAGCACCTCCTGCTGCTTCAACAGCTGAGAAGACTTCATATGCTACTGACTCGGAGTATGAGAACTGGTTCATGGGGTTTCATGTTGATGATAATTTTCTGTTGTCAATTTCAGTTGACTCTAATTCTCTTAATCGCATGGTGCTGAAGCTGCTTTTTAGATGCTTTAATCATACATCTCATCACATCACGAAGGTAATAAGCCTCGCCGTTTGCTTTAGGCCTTCTGGTTGCCTGCACATGCTTCGTTTAGCTTTGTTGCTAGGTGAAGATAGAGTTAATGATCAACCAGTTGCGGTTGTAGAAATTTTCTATATTTCCCTGCTTCATATCTGCTTTTTTTGA 2637 0.493 LPSKSMDAVDSTPPYDPSPQTHAPPQYPNLQHHQSETNGTVTSDAKPPENNNGSHHREPKPLISDGLRQSGPDRDHSGGEEETTSKRRRRSRWDPPPESNDQSGGEGEPGTGPKKRKSRWADDEPKPVVQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISLIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKHASTLAIGAGPSGNNPPWASNSGAAGGAPQAGLGASVVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRVSGLSKGYGFVKYADITMANNAIMAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQQLGAYPSQQYAAGGPLGSAPPVSYGGTPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPMPSYGVQYPPPVQTGPPGAPSLPATSSEMQQSYPPGVQSDNGTSTQSVPVYGNMVHSMPPAAQPAYPASYGYPPYYSAVPPPPPPPAPNPVATSDQSHNIANVPWASNSLVPPPASSADKTTYGADQSQSIGNVPRATNPPAPPAASTAEKTSYATDSEYENWFMGFHVDDNFLLSISVDSNSLNRMVLKLLFRCFNHTSHHITKVISLAVCFRPSGCLHMLRLALLLGEDRVNDQPVAVVEIFYISLLHICFF 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01665 878 Gene3D - 439 546 IPR012677 -
Pste3g01665 878 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 542 IPR000504 GO:0003723
Pste3g01665 878 SUPERFAMILY Retrovirus zinc finger-like domains 345 391 IPR036875 GO:0003676|GO:0008270
Pste3g01665 878 FunFam splicing factor-like protein 1 219 347 - -
Pste3g01665 878 Pfam Splicing factor 1 helix-hairpin domain 116 223 IPR032570 -
Pste3g01665 878 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 227 353 IPR036612 GO:0003723
Pste3g01665 878 MobiDBLite consensus disorder prediction 50 96 - -
Pste3g01665 878 MobiDBLite consensus disorder prediction 728 760 - -
Pste3g01665 878 MobiDBLite consensus disorder prediction 728 775 - -
Pste3g01665 878 CDD KH-I_BBP 226 319 - -
Pste3g01665 878 MobiDBLite consensus disorder prediction 163 182 - -
Pste3g01665 878 Gene3D - 141 218 IPR047086 -
Pste3g01665 878 SMART kh_6 227 319 IPR004087 GO:0003676
Pste3g01665 878 SUPERFAMILY RNA-binding domain, RBD 460 552 IPR035979 GO:0003676
Pste3g01665 878 ProSiteProfiles Type-1 KH domain profile. 242 314 - -
Pste3g01665 878 MobiDBLite consensus disorder prediction 628 642 - -
Pste3g01665 878 MobiDBLite consensus disorder prediction 110 126 - -
Pste3g01665 878 MobiDBLite consensus disorder prediction 1 130 - -
Pste3g01665 878 SMART rrm1_1 465 538 IPR000504 GO:0003723
Pste3g01665 878 SMART c2hcfinal6 374 390 IPR001878 GO:0003676|GO:0008270
Pste3g01665 878 SMART c2hcfinal6 348 364 IPR001878 GO:0003676|GO:0008270
Pste3g01665 878 FunFam splicing factor-like protein 1 444 546 - -
Pste3g01665 878 MobiDBLite consensus disorder prediction 643 674 - -
Pste3g01665 878 FunFam splicing factor 1 347 400 - -
Pste3g01665 878 Gene3D K Homology domain, type 1 219 347 IPR036612 GO:0003723
Pste3g01665 878 ProSiteProfiles Zinc finger CCHC-type profile. 375 389 IPR001878 GO:0003676|GO:0008270
Pste3g01665 878 ProSiteProfiles Zinc finger CCHC-type profile. 349 363 IPR001878 GO:0003676|GO:0008270
Pste3g01665 878 Pfam KH domain 242 314 IPR004088 GO:0003723
Pste3g01665 878 MobiDBLite consensus disorder prediction 615 674 - -
Pste3g01665 878 MobiDBLite consensus disorder prediction 25 49 - -
Pste3g01665 878 Gene3D - 348 400 - -
Pste3g01665 878 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 535 IPR000504 GO:0003723
Pste3g01665 878 PANTHER RNA-BINDING PROTEIN RELATED 79 585 IPR045071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01665 Pste-Chr3 10517618 10522170 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01665 464 611 Eukaryotic Initiation Factors Gene Family AT3G16380 29.936 2.36e-11 65.5