Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01624 GGGAGTAAGAAACATTTGGTTTGCCTTCGCAAATGCACCCTACACTCTAGAGAGAAGAGACTTTCAGAGAGAACCCACGACGACACATTTCTCCGTCGTTTGGAGATGGACGCGGAGCTGAAGTCGGCGAAAGCGGCGTACCGGAGCGCCAAGGCTGAGGGAAACCACCGGGAAGAGGCGCGGTGGGCCAATGTCATCGGCGACATACTGAAAAGCCGAGGAGAGTACGTTCAAGCTCTCAAATGGCTCCGAATCGATTACAACGTTTCTCTCAAATACTTACCGGAAAAGCACTTGCTCCCAACCTGCCAATCCCTCGGCGAAATCTACCTCCGTCTCGAACACTTCTCCGATGCCCTAATTTACCAGAAAAGGCACCTAGATCTTGCGAGGGACGCGGACGACGTCGTTGAGCAGCAGCGAGCGAGCACGCAACTCGGTCGCACTTACCACGAACTGTTCTCGCGATCCGAGTACGACCACAACTCGATTCGCAACGCGATGAAGTACTTCAAGTGCGCGATGGATCTCGCGGTGAAGCTCAAGGAAAATCCTCCTAACAACCAGTCCTCTTTTCTGAAGGAGTTTATTGACGCGCACAACAACATAGGCATGCTGGAGATGGATCGCGATAACTTGCACGAGGCGGAGAAGATTTTAACCCGAGGATTGAAGATTTGTGACGAAGAGGAGGTCAGTGAATACGATGATGGCCGCAGTAGACTCCATCACAACCTTGGTAATGTGTATATGGAGCTTAGACTTTGGGATGAAGCCAAGAAACACATTACGCGGGATATTGTGATCTGTAGCAGAATTGGGCACTGTCAAGGGGAAGCCAAGGGGTTTATTAATCTTGGTGAAATGCATTACAGGACTCAGAAGTATGAAGATGCCAGGGGTTATTATGAGAAGGCGCTTGGTTTGGCAAAGACATTGGAAGACGAGGATGCTTTGGTTAGCCAAATTGAGCAGAATATTGAGATTGTCAGACAAGCTATTAAGGTAATGACTGACATAAAGAAAGAAGAGCAGAACCTTAAGAAGCTCAAAAGAGATATAGCCACTGCCAGAGGGACACCAGATGAGCGCAAAGTCTTGCTAAAGCAGAATGCAGTTCTTGAATGCCTTATTGAGAAAGCAAATACGATCTCTGCGTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCAAGTGAACTCTATGATAGGCAGAGGCTGGCTGATTCATATATGGATGTTGGAGTGTCATACCAGAAACTCAGGAAATTCAACAAAGCAATTAAATGGTACAAAAAGAGTTGGGAAATGTACAAAATTATTGGTAACTTAGAGGGACAAGCAATGGTGAAAATTAACATTGGTAATGTTTTGGATTCTACTAAAAATTGGAGAGAAGCATTGGATGCATATCAAGAGAGCTACAGTATTGCTGTTGAAGCAGACCTTCCTGATGTTCAACTTTCTGCCTTGGAAAATATGCATTATAGCAACATGATAAGATTTGATGATGAGGATGAGACCAGGAGGTTGAAGCTTTTAATTGATAAGCTGAAGAAATCAGAAGAAAAAGTGGCAGAAGCTAAAAGTAGGCCAGAGGATTTTTGCTCTGAAACTGATACTGAAGCAGATGATTATCAGTCAAATGGTGGGTCTGATGATTTTTATTTTCCGGAGACAATTTTGCAATCAAAAACTCTAACTACTGGAAAAGAATTGAAAGATGACATGCCTCTTATGTCACTCTATCAATCCATAAAAGGCTCATACAAAAAGAAAGCAGGCCACAAAGAAAGTCTTACCAACTCTACCAAGCAATATGAACAGTCACCCCATAGTCTGAAAAATCAAACCAGTGATCATCAGACGTTTGTTGGTCGTAAACGTGTCCGTGTGATTCTTTCTGATGATGATGATGACGAGGTGGTGTGTTCAAGCAGAAAGGGTCATGATTGCCTGGTAGAGGACTTCCCCACTCATGATGCCATTAAGAGTAAAGCAAGTCCTCGTAAAATTCAGGTTATCTCAGAGTATGGATCCAAGTGTGCAATTAATGTTGAAGAAAGTAGCAGTTCCTTGACAAAAACTGGCAGACATTCCAGGTCTTGGAGCAATGATATAGTTGCTGAAGCTGATTTTCTTAGTGGCTCTAAATGTGACACTGATGTCTCTGGCAAACAAAAAGATATTGCCCAAATCATGTTACATCATTCCCAAAATGACCTCCAGCAATATATTACATGCCAGATTGGGAATGATCGAATACGTGTAGATGCAACCTTGTGTACCACTGGTGATCAGTTGAACATTGACTCTTTGAAGGCTGCAGTTGCATGCTTATATTATCTTCAATTTCCAGCTGAAAAGATATCAGAGGGATTGTTGCCCATTATTGAGCATATAAAATGTGCTGGAAGAGATCTAGAATCCCTGGAAACTGCTGAACATCTTATGGAAGTTCTGGGAAATGACATGGTTGAAGCTTCGGTCGATGGATGGATTCACAAACGCCTGATAAAAATGTATGTCAACTGCTGCAAGGAGTTGTCTGAGGTACCAAACATCAAGGTACTGAAGAAGCTTTACAATTTAGAGGTTTCAGATGACGAAATTGTTGTGTCTGACTGTGACCTGCAAGATTTGTCTATTACACCGTTGATAAATGCATTGCATTCCCAAAAATCATTTGCTATGCTTGACCTCTCTCACAATTTGTTAGGAAATGGAACAATCGAGAAACTTCAAAAGGTGTTCACATCATCAGGACAATCTTATGGTGGCTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCGACAACTTTGTTTCAGGTTGGGAGTTTTCCTGTGGGGCTTGCAGTTCTGCTGGTAGACTTGTTTCTACTGTATGGTTGCCTATTGCCCTCTTTAGTTGAGATACATGGAACGCCGGATGTATTTGTGCTTCTTCCGATCTGTGAGTGTTCATTGCTATTTGCTCGACTAGAAGTGCTTAACATTTCTGGAAATCGTCTGACTGATGCATGTGGATCTTATCTTTCAACAATCTTAAAAAATTGTACAGCTCTTTGTAGCTTGAATATAGAGAACTGTAGTGTCACTTCCAGAACAATTCAAAAAGTTACGGATGCATTGGATTCCACATCTGTCCTTGCCCATCTATGCATAGGATACAACAACCCTGTATCTGGAAATTCTATAGTCAATCTTCTGTCCAAGCTTTCTACTCTGAAAAGGTTCTCTGAGTTGAATATGAGTGGTCTAAAACTAGGCAAACCGGTTGTCGATACCCTTTGCAAGCTTGCGGGGACCTTAAGTTTATCGGGACTAATGCTTGGAGGCTCGGCTATTGGAACTGAAGGAGGAATAAAATTAGCAGAATCACTGTTCAAAGGGACTGAAGAGCTCATGAAACTTGACCTATCATATTGTGGTCTAACATTTAACTTTGTTTTGAACGCCAATGTTAATTTTTTTTATTCCATCCTAGAGCTGAACCTGGAAGGAAATCCTATAATGCCTGAGGGAAGCAATTCTTTATTTTCTCTTCTTGTAAACCCACGGTGCTGTCTCAAAGTTTTGGTCCTTAGAAAGTGTCAACTTGGGCTTGATGGAATTCTTCACATAATTGAGGCTCTGGCAGAGAACAGCTGTCTTGAGGAACTTAATCTTGCTGATAATTCTGTTCCAAAGGAAGATTCAGCTCTACAATATGATTTATCGGTTAAAAGCTACTCACAGAACCAGGAACAGAAATTTGATACTATGAAAGTTGATGATAATCAAGAGGTCCTTTACTCTCTAAACACTGCCGACCTTCAGCTAGAAGTTGCTGATAGTGAAGATATTCCAGTAGAAGCTGCTGCTTCTGGAATTGACGACAGCTGTGCTAGCTCATGTCAAAGAAATTCATCACCCGAATGCCATGTCATGCAACAGTTTTCAAATGCTATTGGTAAGGCAAAGAACTTGCAATTACTAGACCTTAGCGATAATAGTTTTTCTGCACAAGCTGCGGAAACATTCTATGGTTCGTGGACAACTTTACGACCCCTTTCAAGTCAGAAGCACATTACTGAGCAGATTATTCATTTCTCAACGAAGGAAAATAACGTTTTTATGAATAAAAAGACGTTTGTGGCTTTATCTATACATGTGATGTCAACAGCTGAATTTATGCATTCCACTAGTAGTACATACAGGAGCTCTAGCGTTGTAGATGTTCTTCATCCCGAGAAGGCAAATGTTTCCAAGGTTGAACTCAAGGAGAAGTTGGCCATAATGTATGAAGTGAATAACCTTAATGTTGTCTTTGTCTTCAAATTTTGAACACATTTTGGAGGTGGTAAATCCTCTAGTTTTGGTTTGATATATGATACAATGGACAATGCCAAGAAGTACTAGCCTAAGTATAGGCTTATTAGGGTGAGTCAATAACCGAACAATCTGATTAGAATTTTTTTGTTTATATATCTTGAGATCTCTAGTTTTATAGTTTTAAGGTTTTTATAGTAGTGCACCTCTG 4534 0.4146 GSKKHLVCLRKCTLHSREKRLSERTHDDTFLRRLEMDAELKSAKAAYRSAKAEGNHREEARWANVIGDILKSRGEYVQALKWLRIDYNVSLKYLPEKHLLPTCQSLGEIYLRLEHFSDALIYQKRHLDLARDADDVVEQQRASTQLGRTYHELFSRSEYDHNSIRNAMKYFKCAMDLAVKLKENPPNNQSSFLKEFIDAHNNIGMLEMDRDNLHEAEKILTRGLKICDEEEVSEYDDGRSRLHHNLGNVYMELRLWDEAKKHITRDIVICSRIGHCQGEAKGFINLGEMHYRTQKYEDARGYYEKALGLAKTLEDEDALVSQIEQNIEIVRQAIKVMTDIKKEEQNLKKLKRDIATARGTPDERKVLLKQNAVLECLIEKANTISAWEKHCEFAKEKKKIASELYDRQRLADSYMDVGVSYQKLRKFNKAIKWYKKSWEMYKIIGNLEGQAMVKINIGNVLDSTKNWREALDAYQESYSIAVEADLPDVQLSALENMHYSNMIRFDDEDETRRLKLLIDKLKKSEEKVAEAKSRPEDFCSETDTEADDYQSNGGSDDFYFPETILQSKTLTTGKELKDDMPLMSLYQSIKGSYKKKAGHKESLTNSTKQYEQSPHSLKNQTSDHQTFVGRKRVRVILSDDDDDEVVCSSRKGHDCLVEDFPTHDAIKSKASPRKIQVISEYGSKCAINVEESSSSLTKTGRHSRSWSNDIVAEADFLSGSKCDTDVSGKQKDIAQIMLHHSQNDLQQYITCQIGNDRIRVDATLCTTGDQLNIDSLKAAVACLYYLQFPAEKISEGLLPIIEHIKCAGRDLESLETAEHLMEVLGNDMVEASVDGWIHKRLIKMYVNCCKELSEVPNIKVLKKLYNLEVSDDEIVVSDCDLQDLSITPLINALHSQKSFAMLDLSHNLLGNGTIEKLQKVFTSSGQSYGGLTLDLHCNRFGPTTLFQVGSFPVGLAVLLVDLFLLYGCLLPSLVEIHGTPDVFVLLPICECSLLFARLEVLNISGNRLTDACGSYLSTILKNCTALCSLNIENCSVTSRTIQKVTDALDSTSVLAHLCIGYNNPVSGNSIVNLLSKLSTLKRFSELNMSGLKLGKPVVDTLCKLAGTLSLSGLMLGGSAIGTEGGIKLAESLFKGTEELMKLDLSYCGLTFNFVLNANVNFFYSILELNLEGNPIMPEGSNSLFSLLVNPRCCLKVLVLRKCQLGLDGILHIIEALAENSCLEELNLADNSVPKEDSALQYDLSVKSYSQNQEQKFDTMKVDDNQEVLYSLNTADLQLEVADSEDIPVEAAASGIDDSCASSCQRNSSPECHVMQQFSNAIGKAKNLQLLDLSDNSFSAQAAETFYGSWTTLRPLSSQKHITEQIIHFSTKENNVFMNKKTFVALSIHVMSTAEFMHSTSSTYRSSSVVDVLHPEKANVSKVELKEKLAIMYEVNNLNVVFVFKF 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01624 1445 Gene3D Ribonuclease Inhibitor 842 1270 IPR032675 -
Pste3g01624 1445 MobiDBLite consensus disorder prediction 529 553 - -
Pste3g01624 1445 Coils Coil 333 360 - -
Pste3g01624 1445 Coils Coil 33 53 - -
Pste3g01624 1445 Gene3D Tetratricopeptide repeat domain 353 503 IPR011990 GO:0005515
Pste3g01624 1445 ProSiteProfiles TPR repeat profile. 411 444 IPR019734 GO:0005515
Pste3g01624 1445 Pfam Tetratricopeptide repeat 411 481 - -
Pste3g01624 1445 Pfam Tetratricopeptide repeat 240 311 - -
Pste3g01624 1445 Coils Coil 514 534 - -
Pste3g01624 1445 MobiDBLite consensus disorder prediction 603 624 - -
Pste3g01624 1445 SUPERFAMILY RNI-like 865 1353 - -
Pste3g01624 1445 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1404 1445 IPR012678 GO:0003735|GO:0005840|GO:0006412
Pste3g01624 1445 PANTHER PROTEIN TONSOKU 985 1375 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Pste3g01624 1445 FunFam Protein TONSOKU 35 189 - -
Pste3g01624 1445 Gene3D Tetratricopeptide repeat domain 21 345 IPR011990 GO:0005515
Pste3g01624 1445 SUPERFAMILY TPR-like 43 186 IPR011990 GO:0005515
Pste3g01624 1445 Pfam Ribosomal protein S24e 1408 1445 IPR001976 GO:0003735|GO:0005840|GO:0006412
Pste3g01624 1445 ProSiteProfiles TPR repeat profile. 280 313 IPR019734 GO:0005515
Pste3g01624 1445 FunFam tonsoku-like protein 344 504 - -
Pste3g01624 1445 SUPERFAMILY TPR-like 196 480 IPR011990 GO:0005515
Pste3g01624 1445 SMART LRR_RI_2 1191 1218 - -
Pste3g01624 1445 SMART LRR_RI_2 1107 1134 - -
Pste3g01624 1445 SMART LRR_RI_2 995 1022 - -
Pste3g01624 1445 SMART LRR_RI_2 896 923 - -
Pste3g01624 1445 SMART LRR_RI_2 1162 1189 - -
Pste3g01624 1445 SMART LRR_RI_2 1219 1247 - -
Pste3g01624 1445 Gene3D - 1391 1445 - -
Pste3g01624 1445 MobiDBLite consensus disorder prediction 596 624 - -
Pste3g01624 1445 SMART tpr_5 280 313 IPR019734 GO:0005515
Pste3g01624 1445 SMART tpr_5 451 484 IPR019734 GO:0005515
Pste3g01624 1445 SMART tpr_5 411 444 IPR019734 GO:0005515
Pste3g01624 1445 SMART tpr_5 100 133 IPR019734 GO:0005515
Pste3g01624 1445 SMART tpr_5 197 230 IPR019734 GO:0005515
Pste3g01624 1445 SMART tpr_5 240 273 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01624 Pste-Chr3 10234155 10246986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01624 1404 1445 Cytoplasmic Ribosomal Protein Gene Family AT3G04920 69.048 5.86e-12 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01624 3 10234155 10246986 Pste3g01624 3 10234155 10246986 ECH