Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01606 TCTGTACAGGCTATGGATTCCTTTGAGCCAGATGGAAATGGGAAGGAGGAGTCATTGCCACCACCACCTCCTGTTGTTCCCGCTGATATTGTACCTCTCAAAGCTGAAGAGGAGGTCTCTACCCCTGTCGAACCTGTTAAGAAGAAGGCTTCTCGACTTCCAATTGCCAGACGAGGTCTGGCGTCCAAAGGAATGAAAATACAACTTCTGACGAATCACTTCAAAGTTAATGTTACTAAAGATGATGGGCATTTCTTCCATTATAGTGTGGCATTTTCTTATGAAGATGGACGCCCTGTAGAAGGTAAAGGAGTAGGTAGAAAGATAATGGATAGAGTGCAAGAGACATATCATTCTGATTTAAATGGTAAGGACTTTGCATATGATGGGGAGAAAAGTCTATTCACTCTTGGCTCACTTCCCCAAAACAAGCTTGAGTTTGAAGTAGTTATGGAGGATGTCACATCTAACAGGAATAATGGCAATTGCAGCCCTAATGGTCATGGGGACAATGATAGTGACAGAAAGAGGATGCGTCGACCATACCGTTCTAAGACATTCAAAGTAGCAATAAGCTTTGCTGCAAAAATTCCAATGAAGGCCATTGGCAATGCCTTACGTGGGCAGGAGACAGAGAACTTTCAAGAAGCCATTAGAGTTCTTGATATTATTTTGAGGCAGCATGCTGCCAAACAAGGCTGTCTTCTTGTTCGGCAAAATTTCTTCCACAATGATCCAAATAATTTTGCTGATGTGGGAGGTGGTGTCCTAGGCTGTAGAGGATTCCATTCAAGTTTTAGAACTAGTCAAAGCGGCTTGTCTCTTAACATAGATGTCTCAACTACCATGATAATTACCCCTGGGCCTGTGGTGGATTTCTTAATTTCCAATCAAAATGTGAGAGATCCTTTTCAACTTGACTGGACTAAGGCCAAAAGGACCCTTAAAAATCTGAGGATTAGAACTAGTCCATCCAATCAAGAATTTAAAATCACTGGGCTCAGTGAACTCCCATGCAAAGAGCAGACTTTTACTTTGAAGGGTAAAAGTGGAGGGGATGGTGATGATGGTAATGAGGAAATCACTGTTTATAATTATTTTGTTAATGTTCGTAAGATAGATCTTCGATACTCTGCTGACCTTCCATGCATCAATGTTGGCAAGCCTAAAAGGCCTACATTTTTCCCCATAGAGCTTTGTGAATTGGTATCATTGCAACGATATACAAAAGCTCTGTCCTCGCTTCAAAGGGCTTCATTAGTGGAGAAGTCCAGGCAGAAACCCCAAGAGAGGATGAAAATTCTGACTGATGCACTAAGAACCAGCAACTATGGCTCTGAACCTATGCTCCGTAATTGTGGAATTTCTATAAGCACGGGCTTCACTGAAGTGGAGGGCCGTGTCTTGCCTGCACCAAGGTTGAAGTTTGGCAATGGTGAGGATCTCAACCCGAGGAATGGGAGATGGAATGTCAGCAGAGTGAGATTTGTTGAACCAACAAAGATAGAAAGATGGGCTGTTGCAAACTTCTCTGCCCGCTGTGATGTACGAGGACTTGTGCGGGACCTGATAAGGATTGGGGATATGAAAGGAATTACGATAGAACAACCATTTGACGTGTTTGATGAGAGTCCCCAGTTTAGGCGTGCCCCTCCTATGGTCAGAGTAGAGAAAATGTTTGAAAATATTCAATCCAAACTTCCTGGGGCTCCTCAGTTCCTTCTCTGCCTGATTCCTGATCGTAAAAATTGTGATATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGATTTCGGAATCGTTAATCAGTGTTTGTGTCCTACAAGGGTCAATGACCAGCTCTTGACCAATGTTTTGTTGAAGATCAATGCCAAGCTGGGTGGATTAAATTCAATGTTAAGTGTTGAACATTCACCTGCTCTACCTGTTGTATCCAAAGCTCCCACCCTTATTCTGGGCATGGATGTGTCTCATGGCTCACCTGGCCAGACTGACATTCCTTCAATTGCTGCGGTTTATTGGGAACTTCTGCTTGATTTTTATACAACTTCTGGGAGGAGAAAACCAGAAAATATAATCATATTCAGGGATGGTGTTAGTGAGTCTCAATTTAATCAAGTTTTAAATATTGAACTTGATCAAATTATAGAGGCATGCAAATTTCTCGATGAAAATTGGGAACCAAAATTTGTTGTAATTGTTGCTCAGAAGAACCACCACACCAGATTTTTCCAGCCTGGCTCTCCTGACAATGTCCCACCTGGCAAATATTCTATGCCCTTCTTAGGAACTAGTAGGCCTACCCATTACCATGTGCTGCTGGATGAGGTTGGTTTCTCTCCGGATCAGCTGCAGGAGCTTGTTCATTCATTATCATATGTGTATCAGAGGAGTACTACTGCCATTTCTGTTGTTGCTCCAATATGCTATGCTCACTTGGCTGCAACTCAGCTGGGACACTTCATGAAATTTGAGGATAAATCTGAAACTTCCTCAAGCCACGGTGGTCTGAGTGGTGCTGGTGCTGTTCCTGTTCCCCAGCTTCCTCCACTGCAGGAGAATGTCCGGAACACTATGTTTTTTTGTTGAGGTTTTGGAGCTGCTGTGTCTCTTAACTTATAAAATTATGTACATAAGCTATGTTCTGAACTTTGCTTCATGTTGGACAGTTTAAATTAAGTAGTAGACTCAGTCTTATAAGCTATGTAATGGGCGTTCTGGGACAAGCCTTTTATGTGTTTTCTGGCCGTTGCTATTTTGTAGCAAGACAAGACTTCTTTTTATGATAGTACTATGTCATTTTGGCCTTTTTATGTTTGCATACCAAATGTTTATGGTGGTTTATTTTACCGGATTGGTTAATGGTAGATGTGGTTTGTTTTTATTTTTTGGATGGGGC 2899 0.4201 SVQAMDSFEPDGNGKEESLPPPPPVVPADIVPLKAEEEVSTPVEPVKKKASRLPIARRGLASKGMKIQLLTNHFKVNVTKDDGHFFHYSVAFSYEDGRPVEGKGVGRKIMDRVQETYHSDLNGKDFAYDGEKSLFTLGSLPQNKLEFEVVMEDVTSNRNNGNCSPNGHGDNDSDRKRMRRPYRSKTFKVAISFAAKIPMKAIGNALRGQETENFQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPNNFADVGGGVLGCRGFHSSFRTSQSGLSLNIDVSTTMIITPGPVVDFLISNQNVRDPFQLDWTKAKRTLKNLRIRTSPSNQEFKITGLSELPCKEQTFTLKGKSGGDGDDGNEEITVYNYFVNVRKIDLRYSADLPCINVGKPKRPTFFPIELCELVSLQRYTKALSSLQRASLVEKSRQKPQERMKILTDALRTSNYGSEPMLRNCGISISTGFTEVEGRVLPAPRLKFGNGEDLNPRNGRWNVSRVRFVEPTKIERWAVANFSARCDVRGLVRDLIRIGDMKGITIEQPFDVFDESPQFRRAPPMVRVEKMFENIQSKLPGAPQFLLCLIPDRKNCDIYGPWKKKNLADFGIVNQCLCPTRVNDQLLTNVLLKINAKLGGLNSMLSVEHSPALPVVSKAPTLILGMDVSHGSPGQTDIPSIAAVYWELLLDFYTTSGRRKPENIIIFRDGVSESQFNQVLNIELDQIIEACKFLDENWEPKFVVIVAQKNHHTRFFQPGSPDNVPPGKYSMPFLGTSRPTHYHVLLDEVGFSPDQLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGHFMKFEDKSETSSSHGGLSGAGAVPVPQLPPLQENVRNTMFFC 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01606 862 ProSiteProfiles PAZ domain profile. 312 404 IPR003100 GO:0005515
Pste3g01606 862 ProSiteProfiles Piwi domain profile. 573 823 IPR003165 GO:0003676
Pste3g01606 862 SUPERFAMILY PAZ domain 282 444 IPR036085 GO:0005515
Pste3g01606 862 Pfam Piwi domain 675 823 IPR003165 GO:0003676
Pste3g01606 862 Pfam Piwi domain 574 673 IPR003165 GO:0003676
Pste3g01606 862 SUPERFAMILY Ribonuclease H-like 557 821 IPR012337 -
Pste3g01606 862 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 61 672 - -
Pste3g01606 862 SMART Piwi_a_2 573 823 IPR003165 GO:0003676
Pste3g01606 862 Gene3D - 675 862 IPR036397 GO:0003676
Pste3g01606 862 MobiDBLite consensus disorder prediction 1 29 - -
Pste3g01606 862 Gene3D - 638 674 IPR036397 GO:0003676
Pste3g01606 862 SMART DUF1785_2 235 287 IPR014811 -
Pste3g01606 862 Pfam N-terminal domain of argonaute 66 225 IPR032474 -
Pste3g01606 862 CDD PAZ_argonaute_like 287 403 - -
Pste3g01606 862 FunFam Protein argonaute 7 282 408 - -
Pste3g01606 862 Pfam PAZ domain 291 420 IPR003100 GO:0005515
Pste3g01606 862 MobiDBLite consensus disorder prediction 156 178 - -
Pste3g01606 862 Pfam Mid domain of argonaute 483 536 IPR032473 -
Pste3g01606 862 Pfam Argonaute linker 2 domain 430 476 IPR032472 -
Pste3g01606 862 Pfam Argonaute linker 1 domain 237 285 IPR014811 -
Pste3g01606 862 Gene3D paz domain 281 408 - -
Pste3g01606 862 Gene3D - 468 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01606 Pste-Chr3 10108970 10116967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01606 46 862 Eukaryotic Initiation Factors Gene Family AT5G43810 31.723 1.03e-126 404