Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01600 AAAAAAAGGAAAAAGCGATGGAGAAACGACCCATTGAATTTAAACTATTGAAGTCGGTGCGGGCCCCACTCTCTCTCTAAATCCCGATCCAAACAGCACCTCCTCCATACTGGTCATCACTGCTTTCACCTTCTCTTGTAACATTTCCCTCCGCCACCACCACCATGGCGGCGGCGGCGGCGGAGCCCGAACCGAAAACGTACTGGTGCCACGAATGCGACATGAGCGTGTCCCTGACGCGCGCCCCCTCCCCTCTCCTCTGCCCGCACTGCCACACCCACTTCCTGGAACTCATGGACTCCCCCCTCTCCCTAAACGACGCCGAATCCCCCCTCTTCGACGTCCTTTTCCAAGACGCGCTTTTCCTCCTCTCCCCCAAACAACGCCTCTCCGCTAAACCCCTCTCCTTCCCCTCAATCCCCGTCACCCCTTCCCTACTCTCCTCCCTCGACCCAAACGCCGTCGTTCTCTGCGCCATCTGTAAAGACCAAATTGCCCTCCACCAAATCGCCAAACAACTCCCCTGCAATCACCTCTACCACGCCGATTGCATCACTCCCTGGCTCCAACTTCACGCCTCCTGTCCCTTATGCAGGTTTCGGTTGGAAGAGGAGGAGGAAGAGGAAGAAGGTGATGACGGCGTGATGACGGAGATGAGACGGGAGCTGATTGCGAGGCTGACGGAGTTGACGGAGGAGGATTTCTACGGGCTGAGGACCACGCTCAGTCACATTGCGTCGCGCCACGCGCGAATCGAGGAGAACGAGAATCTTCACCGCGGGCAAATTGGTGAACCTCCGAGTCGCGAATCTGCTTGCTGATTACGTTTATAAGGTATATAGTGTATTAAAATATTGTCGAAGTTGTATCACCATAGATCGTCTTATCAAGTGTAAATCTGCACCGACGATTATGCTGCTTCTGTTCTTTCCCTCCTTTTTTGGGAATCTCCAACTAGCTAGTTGTAGTGTTATAGCCAAAAATACAATAATTTGATGGAATGGTCCAGTGATGTGCATCTCTCTTCATGTCTTCCACTCTCTCTATGTTGCTCCTTGGAACTGGATTTTCTTAGCAGAATTTCCCCTCTATTTTAGGCCATAAAATATTGTGTAAAATTTAGCTTGCTTTTGTGTTGTGTCTGAATCCTTTCCACTTTTTGTTCACATTTTTTTTTTGTTTTGGCTTTACAGTAGATGATAAATATTGTTGTAGTTACAGTATGAGATTGTTGAGGGATTGAATCATCTGAGTGTGGCTGTGTACCATGGAGGAGCCTTAAAATGCATATTTTGTTGTGGTGTGAGTTGTGCTTTTGATCTCTACTTGAGGAATAAATTCAGTTGGTTAATTATG 1356 0.4867 MAAAAAEPEPKTYWCHECDMSVSLTRAPSPLLCPHCHTHFLELMDSPLSLNDAESPLFDVLFQDALFLLSPKQRLSAKPLSFPSIPVTPSLLSSLDPNAVVLCAICKDQIALHQIAKQLPCNHLYHADCITPWLQLHASCPLCRFRLEEEEEEEEGDDGVMTEMRRELIARLTELTEEDFYGLRTTLSHIASRHARIEENENLHRGQIGEPPSRESAC 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01600 218 ProSiteProfiles Zinc finger RING-type profile. 103 144 IPR001841 -
Pste3g01600 218 CDD RING-H2_PA-TM-RING 103 144 - -
Pste3g01600 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 161 IPR013083 -
Pste3g01600 218 SUPERFAMILY RING/U-box 102 148 - -
Pste3g01600 218 Pfam Ring finger domain 103 144 IPR001841 -
Pste3g01600 218 SMART ring_2 103 143 IPR001841 -
Pste3g01600 218 Pfam zinc-ribbon 12 44 IPR039525 GO:0061630
Pste3g01600 218 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 82 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01600 Pste-Chr3 10077758 10081140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01600 6 64 C3H Transcription Factor Family AT3G60080 47.692 3.11e-09 53.9