LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g01588	GCCCACTGTCACAGCTAATGCACTTGGCAAATCCAACCACATACAGCGCAAGTCGAACTCAGATCCCACTTTGATAGAAGTGAAAGCAGTTCGGTCTGAACCATCGCTAACCGTACGATCTAAATCGAACGGCACACACCACGCGTGTGTACTTATGTCTCATTGAATCTGTGCGACACGCACTCATTCTCTCTCTCTCCCCTCTCTCTCTCCCTCTTCTCGTTTCTGCAACTCCCGACGAAACCCTAACCTCCGTCAAACGCCGTCGTTTCGCTCCCCAGCCTCGCCATTCTCGCGCGCTTCCACCGCTGCGCGAATTCGAGTTCGTGGATTCTTCTTCGCGAGATTTGTAAACCAATTTGTCGTCAGCTCCTAATAATTTATAGTCGTTGCTGGGTTAAAGCATTCAGTAGATGGTACATGGCACATTTGCCCATGAACTAGGCACCTAGTAAGGTATTGTCATTAATTGTTTGACATGGATGTTCATGTTATAAATCTGGAAGGAAGTGGGCCTCAAACTAAGGCAGATAATGGGGATGCAGAACCAAGTGATGGTGAAGTTAATAATGCTGAAAACTATGGATCTCAAGTTGAGGATGGGATTTCTGAGCCATGTGTAGGTATGGAATTTGACTCTGAAGATGTTGCTAAGACATTTTATAATGAATATGCTAGACACATGGGTTTTAGTTCTAAAGTTGGTCCATATGGTCGCTCTAAAGCTGATGGGGAAAATACATATAGGGAGTTTGTGTGTGGTACGGAAGGTTTGAAAAAAAGTTGCAATGCAATGATTAAGATTGAACTAAAGGGTCAAAATAAATGGGTTGTGACAAAATTTGTGAAGGAGCACAGTCATTCCGTGGTTAGATCCAGTAAGGCACATAATAATCGTCCAAGTAAGCATTTTTCCAGTGTTGGAAGGACAATGCCTGAAACTTATCAAGGAGTGGGTCTTGTTCCCAGTGGTGTAATGTATGTATCTATGGATGGGAATCGTGTTTCGAATCAGAATAATCGTGGGATGAAGAATATTCATCCAGTTAAACATTCCACACCGATGAATTATACTGTTAGGCCTTCTTTTCAAAACAAGACATTGGGGAAGGATGCTCATAATCTGCTGGAGTATTTTAAGAAGATGCAGGCTGAGAATCCTGGTTTCTTCTATGCCATACAGCTTGATGAAGACAATCGTATGTCTAATGTCTTCTGGGCAGATGCAAGATCAAGAACAGCATACAGTTATTATGGTGACACAGTTCATCTGGACACAACATACAAAGTAAATCAATATAAGGTACCATTTGTGCCTTTTACTGGGGTAAATCATCATGGTCAAATGGTCTTGTTTGGTTGTGCTCTCCTTTTGGATGATTCTGAGACATCTTTGTTATGGCTGTTAAAGACATTTCTTACAGCAATGAATGATCGTCAGCCTGTCTCTATAACTACTGATCAAGACAGAGCCATGCAGATAGCAGTTTTCCAAGTTTTCCCACAAGCTCGACACTGTATCAGCAAGTGGCATATCTTGAGAGAAGGTCAAGAAAAGTTGGCCCACGTATGTCTAGCACATCCAAATTTTCAGGTTGAGCTTTATAATTGTATTAACTTGACAGAAACCATTGACGAGTTTGAGTCATCTTGGAATTCTATCCTTGATAAATATGAACTCCGAAGAAATGATTGGCTTCAGTCATTGTATAATGCTCGTGCTCAATGGGTTCCTGCATTCTTCCGTGGTTCATTTTTTGCAGCAATATCTCCTGCACAAGGATTTGATGGTTCTTTTTTTGATGGTTATGTCAACCAACAGACAACATTGCCATTGTTCTTCAGGCAATATGAAAGAGCTTTAGAGAGCTGGATTGAAAAGGAAATAGAAGCAGATTTTGAGACAGTTAGCACTACACCAGTTTTGAAGACACCTTCACCAATGGAGAAACAGGCTGCTAATCTTTATACAAGAAAAATATTTTCTAAGTTTCAAGATGAGCTTGTTGAAACTTTTGCTTATACTGCAAATAAAATTGATGGAGATGGGCCACATAGCACATTTAGAGTTGCAAAGTTTGAGGATGACCAAAAGGCATACATGATCACATTAAATCATCCTGAGTTGAAAGCTAACTGTAGTTGTCAAATGTTTGAGTATTCAGGCATTCTTTGCAGACATATTTTAACAGTTTTCACGGTGACAAATGTACTTACATTACCACCCCATTACATCTTAAAACGGTGGACAAGGAATGCAAAAGGCAGTGCTGGATTGGATGAACATACCAGTGAATCACATGCACAGGAGTCTTTGACAACAAGGTATGGCAATCTATGTAAGGAAGCCATCAGATACGCAGAGGAGGGGTCAGTGACTGTGGAAACTTATAATGCTGCAATAAGTGGTCTTAGAGAAGGTTTAAAGAAGGTGACTAATGTGAAAAAAAATGTTGCCAAAGTTACGCCTCCCAATAATCAGGCCAGTGGGACTGCTTATGATGACAGGAAAACTCCAACTCCAACTTTGGATACAACTCCTATTTTATGGCCACGACAAGATGAAATAACAAGGAGGTTTAATCTTAATGATTCTGGTGGTCCTGTTCAATCAGTTGCTGATCTAAACTTGCCACGGATGGCCCCAGTCTCCCTTCATCGAGATGATGGGACATCTGAAAGCATGGTAGTTCTTCCATGCCTAAAATCAATGACATGGGTAATGGAGAACAAGAACTCAACTCCAGGGAATAAAGTAGCTGTTATCAATCTGAAGTTGCAAGATTATAGCAGGGCTCCATCCACAGAATCTGAGGTTAAGTTTCATCTCTCCAGAGTTACTTTGGAACCAATGTTGAAGTCTATGGCGTACATCAGTGAACAGCTCTCAACACCAGCTAATAAGGTTGCTGTAATAAATCTCAAGCTTCAAGATACCGAGACAACCTCTGGTGAGTCAGAAGTAAAGTTTCAGGTGTCCAGGGATACATTGGGTGCTATGCTACGATCAATGGCCTATATCCGTGAGCAGCTTTCTCATGCTATGTTAAATTTTGGCAGGACGATGCACAGTCTGAACCTCTATCGAAAAAGCATAGGAAGTAACTTAACAGATTTTCATTTCATATCCATTGGGTATGGCAACATATCTTCTGGAAGTGTGATGACCATTCAACACACAAAATGCTTAGAAATTGTAGTGTATCTGTTGTATCTTTTAGTGTGCGTGTAGCTTTTTCTCAAGTTTATAGTAACTTATGTGTTGTAATGTATCATATCATAGGTAGCAGCTGTTAAAAGTGGTTCAAATATCTACCCTCCATCAAACAATCACAAATAACGAATAAACATGGGTTTAACAATTTAGTTTTAATGTAAAAGAATGTACAAGAGTAAAAATGAAAAAATTATTACATGGAC	3420	0.4023	MDVHVINLEGSGPQTKADNGDAEPSDGEVNNAENYGSQVEDGISEPCVGMEFDSEDVAKTFYNEYARHMGFSSKVGPYGRSKADGENTYREFVCGTEGLKKSCNAMIKIELKGQNKWVVTKFVKEHSHSVVRSSKAHNNRPSKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRVSNQNNRGMKNIHPVKHSTPMNYTVRPSFQNKTLGKDAHNLLEYFKKMQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSYYGDTVHLDTTYKVNQYKVPFVPFTGVNHHGQMVLFGCALLLDDSETSLLWLLKTFLTAMNDRQPVSITTDQDRAMQIAVFQVFPQARHCISKWHILREGQEKLAHVCLAHPNFQVELYNCINLTETIDEFESSWNSILDKYELRRNDWLQSLYNARAQWVPAFFRGSFFAAISPAQGFDGSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETVSTTPVLKTPSPMEKQAANLYTRKIFSKFQDELVETFAYTANKIDGDGPHSTFRVAKFEDDQKAYMITLNHPELKANCSCQMFEYSGILCRHILTVFTVTNVLTLPPHYILKRWTRNAKGSAGLDEHTSESHAQESLTTRYGNLCKEAIRYAEEGSVTVETYNAAISGLREGLKKVTNVKKNVAKVTPPNNQASGTAYDDRKTPTPTLDTTPILWPRQDEITRRFNLNDSGGPVQSVADLNLPRMAPVSLHRDDGTSESMVVLPCLKSMTWVMENKNSTPGNKVAVINLKLQDYSRAPSTESEVKFHLSRVTLEPMLKSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSHAMLNFGRTMHSLNLYRKSIGSNLTDFHFISIGYGNISSGSVMTIQHTKCLEIVVYLLYLLVCV	917

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g01588	917	MobiDBLite	consensus disorder prediction	130	149	-	-
	Pste3g01588	917	MobiDBLite	consensus disorder prediction	134	149	-	-
	Pste3g01588	917	Pfam	MULE transposase domain	263	355	IPR018289	-
	Pste3g01588	917	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	37	654	IPR031052	GO:0006355
	Pste3g01588	917	MobiDBLite	consensus disorder prediction	661	688	-	-
	Pste3g01588	917	MobiDBLite	consensus disorder prediction	1	32	-	-
	Pste3g01588	917	Pfam	FAR1 DNA-binding domain	60	101	IPR004330	-
	Pste3g01588	917	ProSiteProfiles	Zinc finger SWIM-type profile.	541	577	IPR007527	GO:0008270
	Pste3g01588	917	SMART	26again6	552	579	IPR006564	GO:0008270
	Pste3g01588	917	Pfam	SWIM zinc finger	550	575	IPR007527	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g01588	Pste-Chr3	9995824	10014413	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Pste3g01588		MULE	3.2e-23	CL0219