Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01578 ATGGTGACCCTCAATTCCATGTTGCCTTATGCAAGAACCAAATGTGGGTCTGGTGGTGCTGTTGTTTATGTTTTGGGAATCATTCACTTATTGACTGAGCATTTGGGCCAAATAGAAGGGCGTATTAGATGCCTAGAAGCAGTGGTTTTCAGGGAAAGGCAGCGTCAAAGGCGGCAACCGAGTCACACTCCAATTCGGATAACTAACAATACTGGAGAATTGATAACGGTATCTGATGTTGAACATGAAGAAAGGGCACTTCGAGAAGTGGTTGGAGATGATGTTGGAGTTGGGAGAATGGGTAATAAAAGGAAGGCTAGCTATTTGGTTGCTAAAGCATTGGGGGTGGAAGCCAATGAGGGTGAGGGTTGTTCTGCAAATTTGTTTCATTGTAATATATGTTTTGACAAGGCAAGAGATCCAGTTTTAACTTGCTGTGGTCACTTGTTTTGCTGGCCATGCTTTCATAAGTTGTCATATGCTTACTCCAATGCAAAGGAATGTCCAGTTTGTAAAGGAGAGGTCACTGATGAAGGCATTATCCCAATTTATGGCAATGATAGTGTTGAGAGTAGTGGTCGGTTGGAATTGGACGAAACTGGGTTTAGAGTTCCTGCTCGACCCCGTGCACAAAGAAATCAGAGTACGAGGCAACGGTTCAGACACTGA 669 0.438 MVTLNSMLPYARTKCGSGGAVVYVLGIIHLLTEHLGQIEGRIRCLEAVVFRERQRQRRQPSHTPIRITNNTGELITVSDVEHEERALREVVGDDVGVGRMGNKRKASYLVAKALGVEANEGEGCSANLFHCNICFDKARDPVLTCCGHLFCWPCFHKLSYAYSNAKECPVCKGEVTDEGIIPIYGNDSVESSGRLELDETGFRVPARPRAQRNQSTRQRFRH 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01578 222 Pfam Zinc finger, C3HC4 type (RING finger) 130 176 - -
Pste3g01578 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 212 IPR013083 -
Pste3g01578 222 SMART ring_2 131 171 IPR001841 -
Pste3g01578 222 SUPERFAMILY RING/U-box 127 184 - -
Pste3g01578 222 ProSiteProfiles Zinc finger RING-type profile. 131 172 IPR001841 -
Pste3g01578 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 99 217 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01578 Pste-Chr3 9886732 9887620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01578 116 221 C3H Transcription Factor Family AT3G58030 44.860 3.19e-27 105