Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01572 CACGTACTAGCCCCCCTCTCTCTCTCTCTTATCTCTATTATAAAGACTCTTCTCTCTCAAATCTCCTCCTTAATTCTCAGTCCAAATTAAACCACACCTTCTCCAATTCTATTCCACATTCCCCTCTCTCTCTCTCTTCACTGAGAAAGAGAAAGAGATCATGGAGCTTGGTTTGAGCTTAGGAGAATCTTCAAGACCTTTGCTTGGTTTCATGGAAAAGCCTCGTGAAGGTTCTAACCAACTGGGGTTAGGCTTCAACACCACGTTATCAATTGGTCCAATCATCACTATACAAAAGGATCATCAACAACAACAACAAGAATATCAAGAAGAAGAAGAAGAAACAAAGCCAAACAACAACAACAACAACACTCTCAAAACAGAAGATCCTACTCACTTTTCTTCCAAATCCAACAACCCAGTTCTTCATCAACTTGATTTTCTTCCTCAACTCGCTCTTCCATGGCACCCTCCTTCTGAAAACGGGAGTTTATCATCTGATTTGGGAGGTTCTTCTAGAGGCTTGGACGTGAACGCGCAGCCGCCGCCGGCGGAGGACGAGGCGGAGGAAGCGGCGGTGCTGTCGTCGTCTCCGAACAGCGCCGCCTCGTCGTTCCAAATGGATCTCTGCATATACAACGGAGGGAGCTTCTACAAGAGGGATCACTCTGAGGGTGAAGCTTATGATCAAAGAGCCACTTCAAGGGCCAGTGATGATGATGATAACAATGGTAGTGGTGGCAATCCCAGAAAGAAACTCAGACTTTCCAAAGAACAATCTGCGTTCCTTGAAGATAGTTTCAAGGAGCATAACACTCTTAATCCAAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCGACCTCGTCAAGTAGAAGTTTGGTTCCAGAATCGTAGAGCAAGGACCAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGACACTAACAGAAGAGAATAGAAGGCTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGAGTTCAAACCCATTCTACATGCAATTACCAGCAACTACTTTGACCATGTGCCCTTCTTGTGAACGTGTGGCCACAAATTCCACATCCACTTCCACCAGTGCTCCTAGTGCCACCATCAATGCTAATTCAGGAGCCATGGCCAGTGTCAAAACAAGTATCAGCAACAATAATAACAACAACAATGACTCAAATTCCAAAGCCATTGGATTCCCCTTTGGTAAACCGAGGTTTCACCCATTTGTTCACACTAGCCAACAACAACCACCCCATCAACACCAATCTCCAGCATCTTGAAGATGTGCATTCAAGACTAGTATAATTTGAGTTGAGGCTTGGAAATTGATTTGATTTTTGTAAATAGGGAAGTTAGTTAATTATGAGACGATGATAGGTTTTTTTTTCTGTGGTAAGGGAGATGGATGGAGTCTATATAGAATTTGGACAATTGGGTTTTGTTTTTCTTGTTTGGATCTGTGTATTCTCCTTCTTTCTCGGGTTTTATCCATACTGAAATCAGAAAGAAGAAGAAAAAGAAAAATTTAGATAGTGAAAATAGATATCAAAGAGAAAGTGAAATGATACTGGATTTTGT 1613 0.4216 MELGLSLGESSRPLLGFMEKPREGSNQLGLGFNTTLSIGPIITIQKDHQQQQQEYQEEEEETKPNNNNNNTLKTEDPTHFSSKSNNPVLHQLDFLPQLALPWHPPSENGSLSSDLGGSSRGLDVNAQPPPAEDEAEEAAVLSSSPNSAASSFQMDLCIYNGGSFYKRDHSEGEAYDQRATSRASDDDDNNGSGGNPRKKLRLSKEQSAFLEDSFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKSSNPFYMQLPATTLTMCPSCERVATNSTSTSTSAPSATINANSGAMASVKTSISNNNNNNNDSNSKAIGFPFGKPRFHPFVHTSQQQPPHQHQSPAS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01572 384 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 58 329 - -
Pste3g01572 384 SMART HOX_1 195 257 IPR001356 GO:0003677
Pste3g01572 384 FunFam Homeobox-leucine zipper protein 18 179 258 - -
Pste3g01572 384 MobiDBLite consensus disorder prediction 65 86 - -
Pste3g01572 384 Gene3D - 201 251 - -
Pste3g01572 384 ProSiteProfiles 'Homeobox' domain profile. 193 253 IPR001356 GO:0003677
Pste3g01572 384 MobiDBLite consensus disorder prediction 337 384 - -
Pste3g01572 384 Coils Coil 41 61 - -
Pste3g01572 384 MobiDBLite consensus disorder prediction 45 86 - -
Pste3g01572 384 Pfam Homeodomain 197 251 IPR001356 GO:0003677
Pste3g01572 384 CDD bZIP 246 285 - -
Pste3g01572 384 MobiDBLite consensus disorder prediction 337 354 - -
Pste3g01572 384 MobiDBLite consensus disorder prediction 106 120 - -
Pste3g01572 384 Pfam Homeobox associated leucine zipper 253 287 IPR003106 GO:0006355|GO:0043565
Pste3g01572 384 SUPERFAMILY Homeodomain-like 183 254 IPR009057 -
Pste3g01572 384 ProSitePatterns 'Homeobox' domain signature. 228 251 IPR017970 GO:0000981|GO:0006355
Pste3g01572 384 SMART halz 253 296 IPR003106 GO:0006355|GO:0043565
Pste3g01572 384 Coils Coil 266 289 - -
Pste3g01572 384 MobiDBLite consensus disorder prediction 367 384 - -
Pste3g01572 384 CDD homeodomain 196 254 IPR001356 GO:0003677
Pste3g01572 384 MobiDBLite consensus disorder prediction 171 202 - -
Pste3g01572 384 MobiDBLite consensus disorder prediction 100 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01572 Pste-Chr3 9807687 9810164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01572 113 312 Homeobox Transcription Factor Family AT2G44910 62.136 4.91e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste3g01572 Homeodomain 1.8e-15 CL0123