Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01562 ATGAATGAATCTCATAACACCATTCCCTTCTTGTTCAGATGCCCCATTAGTTTAGACTTGTTGGAGGATCCTGTAACTTTGTGCACAGGCCAAACCTATGACAGATCAAACATAGAAAAATGGCTCGCTGCAGGTAACCTCACATGTCCAGTAACAATGCAAAAGCTCCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTTCAACTAGGTCCCCTATTCGACCCTGCAAACCCTGAAACTTCAACTATTGACTCTTTAGCTTCTCTAAAACGCACCCTTGAATCCCATGAAAGCAGCTTAGAAAACAAGTTCCAAGCACTAAAGAAAATCTATCTCTTATCTGATGATTATTGTTCCTTTAACAAATCATGCTTCCTCCAACTGGATTTCTTACCACTCCTATTGGAACTAGTCTTTGGAAGAGCTGAAACTCATGTATCTTCAAAAAATCACATGAACTTCATAGAGCTAGCACTTTTTTGCATTCAGAAATTGGTGCTACTCGGTAGTTTGGAGCCTCTAAATGCTATCAAAGATGGTTCTAAATTAGTCACCTTTCTGCTACTATTCGAAAAGGGTACTGACTCGGTTAAGACAAGCTTGTGCCGTGTTATAGAGTCAGCGTCATCATCATCCAAGACAGAAGATTTATGTTGTACGCTTGGAAACTCTTCCAAACTAGTGCACGAGATTGTTCAGGTTATTAACAAAAATGACGAGGTTTCTGGGGACGCAATTAAAGCCATGTCAGCACTATGTTCATTGCAATCAAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATAAATGGGATCTTGAGATACATTTCATCCGAAAGAAGGAACATGACACCACTGGCAATGAGAATAGTAGAGAAACTTGTGGGATTGGAAAGTGCTAAAGAAATATTAGTGAATTACCCTAATAGTGTTCAAATTTTAGTGAATATGGTTTTCAGGGTATCTAATCAAGAATGCAGTGAGAGTGCTGTTGAGGTGCTTCTAACTGTTTGTGGTGAATTTGTACGTGCAAGAGAAGAAGCCATTGAAAGTGGAGTTTTGACTCGTTTGCTTTTGCTTCTGCAGAGTCAGTGTAGCAACACAACAAAATCAAAAGCAAGAATGTTACTCAAATTGCTAAGATCCTAG 1170 0.4 MNESHNTIPFLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPLFDPANPETSTIDSLASLKRTLESHESSLENKFQALKKIYLLSDDYCSFNKSCFLQLDFLPLLLELVFGRAETHVSSKNHMNFIELALFCIQKLVLLGSLEPLNAIKDGSKLVTFLLLFEKGTDSVKTSLCRVIESASSSSKTEDLCCTLGNSSKLVHEIVQVINKNDEVSGDAIKAMSALCSLQSNRESLVRGGAINGILRYISSERRNMTPLAMRIVEKLVGLESAKEILVNYPNSVQILVNMVFRVSNQECSESAVEVLLTVCGEFVRAREEAIESGVLTRLLLLLQSQCSNTTKSKARMLLKLLRS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01562 389 SUPERFAMILY ARM repeat 95 386 IPR016024 -
Pste3g01562 389 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Pste3g01562 389 SUPERFAMILY RING/U-box 5 76 - -
Pste3g01562 389 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Pste3g01562 389 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Pste3g01562 389 PANTHER WDSAM1 PROTEIN 8 388 IPR045185 GO:0061630
Pste3g01562 389 CDD RING-Ubox_PUB 12 56 IPR045210 -
Pste3g01562 389 Gene3D - 72 389 IPR011989 -
Pste3g01562 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 71 IPR013083 -
Pste3g01562 389 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01562 Pste-Chr3 9747649 9748818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01562 8 373 U-box Gene Family AT3G19380 31.948 3.53e-45 159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01562 3 9747649 9748818 Pste3g01562 3 9747649 9748818 ECH