Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01556 GATTAGTGGTAGTACATAGTTTGACAAACTTGACCTAAGTGGCAAAGTCCTCCACAGAAATAAACCAAAATAAGCAAACGATGGCCTGTGGAAGTGTCAACCTTCCTCCTGGCTTTCGCTTCTCTCCAACTGATGAAGAGCTTGTCCTTCACTTTCTTTATTCCAAGGCTTCTCTACCATGCCATCCCAACATCATTCCAGACCTTGACCTCTCTCTGCTTGATCCATGGGAATTAAATGGTAAGGCGCTGTCAAGTGGAAATCAACACTATTTCTTCACCAAAGCAAAGGAAAACAGGTCCACAGAAAATGGGTTTTGGAAGGAAATAGGAGTCATAGAACCAATAGTATCTGCTTCTGAAAAAGTGGGGATAAAGAAGTACCTTGTGTTCAACCTTGGTGAAGCTCCACAAGGCACTGAAACCAGTTGGGTCATGCAAGAATATCATATTGCATATAGTGAAAATACTCGCGGAAGACGAAAAGCTGTGAGTGATCAATATAGGAGCAAATGGGTATTGTGCAAAGCCTATGAAAAGAAAAGTTGTGAATCCCAACAAGGTTACAGCGATGAGGATGACACCGGAACTGAGGTTTCGTGGCTAGACGAATTCTATATGTCGTTAGATGATGATCTTGAGGAAGTTATAAGCCTGCCTAAT 662 0.4215 MACGSVNLPPGFRFSPTDEELVLHFLYSKASLPCHPNIIPDLDLSLLDPWELNGKALSSGNQHYFFTKAKENRSTENGFWKEIGVIEPIVSASEKVGIKKYLVFNLGEAPQGTETSWVMQEYHIAYSENTRGRRKAVSDQYRSKWVLCKAYEKKSCESQQGYSDEDDTGTEVSWLDEFYMSLDDDLEEVISLPN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01556 194 PANTHER NAC TRANSCRIPTION FACTOR 56 8 164 - -
Pste3g01556 194 Gene3D NAC domain 17 157 IPR036093 GO:0003677|GO:0006355
Pste3g01556 194 ProSiteProfiles NAC domain profile. 8 153 IPR003441 GO:0003677|GO:0006355
Pste3g01556 194 Pfam No apical meristem (NAM) protein 9 124 IPR003441 GO:0003677|GO:0006355
Pste3g01556 194 SUPERFAMILY NAC domain 4 153 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01556 Pste-Chr3 9686859 9687749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01556 6 161 NAC Transcription Factor Family AT1G01720 43.636 1.63e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste3g01556 NAM 5.7e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01556 3 9686859 9687749 Pste3g01556 3 9686859 9687749 ECH