Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01538 ATGAAAAAAGTTATTCCCCCGAACGGCAAAATCTCAAAGGATGCCAAAGAGACAGTTCAAGAATGTGTGTCTGAGTTCATTAGTTTTGTCACTGGGGAAGCTTCTGACAAATGTCAAAGGGAGAAGAGAAAGACCATCAATGGTGACGATGTCATATGGGCCATCACAACCCTTGGCTTTGAAGATTATGTTGAACCCTTAAAAATTTACCTACAGAAATACAAAGAGCTAGAAGGAGAAAAACTTAATATCCCTAAACAACTACGTTCTGAACAAAGGCTTCAACAACAGCACCATAATAATCAAGACGATAATAACCAATCATTCAATGGTACATATACCTCTACAAATCTCATTTCTCAGCCTCCCTTTGTGGCCTCGGATCAGAAGTTTTCACTACCCTTCTCCCCAAACTCAATTCAGAATCAGCTACGGCAACAAGACCAGATTGATTCAGTAGGGCACTGGTGGACTGAAACCGTCACTGCACATGGCGGGTTGACAGCCGGCACTGCAAACCGACAACTGAGTTGCCAGTTTGGACAAAATCTTGAAAACTGGCAACTGAAATGA 573 0.4206 MKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKIYLQKYKELEGEKLNIPKQLRSEQRLQQQHHNNQDDNNQSFNGTYTSTNLISQPPFVASDQKFSLPFSPNSIQNQLRQQDQIDSVGHWWTETVTAHGGLTAGTANRQLSCQFGQNLENWQLK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01538 190 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Pste3g01538 190 SUPERFAMILY Histone-fold 1 111 IPR009072 GO:0046982
Pste3g01538 190 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Pste3g01538 190 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Pste3g01538 190 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Pste3g01538 190 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 108 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pste3g01538 190 MobiDBLite consensus disorder prediction 99 113 - -
Pste3g01538 190 ProSitePatterns NF-YB/HAP3 subunit signature. 22 38 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pste3g01538 190 Gene3D Histone, subunit A 1 111 IPR009072 GO:0046982
Pste3g01538 190 MobiDBLite consensus disorder prediction 91 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01538 Pste-Chr3 9576191 9577180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01538 1 156 CCAAT-HAP3 Transcription Factor Family AT2G13570 62.275 1.24e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pste3g01538 CBFD_NFYB_HMF 5.9e-20 CL0012