Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01522 CCAAAATAAAGTTGTTGAAATGAAATTCAAATATATGTAACGAAGCGGGAGAAGAGAAGAGTTTAGGTTGGAGAAGAGAAGAAAAGGCAACAATGGCGAACAGCAAGAGCACTAAAAAACCAATGAGTCTAAACGACAGTCACTATCGCTTCCTCCAAGAACAAGATCACTCCGCTCCTACCAAACCCTTTAGGGATGAAGAATCCACGCACGAAAACATCCCTCACTTTTCCGCAATCACCGACTTCGATTCTCCCATCGGGTTAAATTCGGACGAGAAACTCCAACGGAACAAGGAACAACTAGAAGAAGCTCCATCCAACCATATTCCCCAATTTTCTCTTAATTCTACTCCTCGGCAAAACTTGGATGAGAAACACGAACCAATCAGGTTTTCACAAGATGAAGAAGCTCTTCCACAATTTTTGGTTAACTCTACTCCTAGGCAAAACTTGCATGAGAAACACGAACAAATTAAGTTTCAAGAAGAAGAAGCAGAAGAAGAAAACGAAGAAGAAGCTCCACCAAACGATGTCCAACAATTTTCAGTAAACTCCACCCGTAGCCAAAATTCAGACAAGAAACACAAACCAATGAAGTTTCAAGAAGAAGAAGAAGCTCCACCTGACGCCGTTCATTTCCCCCCTATGGAAGAAAAGAAGACAAAGGTGAAAGTACAGGGCCGCCGCCGCCTCTGCAAGGTTGTGCATGAAGATGCAGGCAAAAGTGTGGCGGTTGATGAGTCCAAGTTTGATGAACTCATTGACCTTGATTCGCCTGTTCCCGCAAGGAGAAACACCATACAGATTGAGGAGAACAGGGGCAAAAATGAAATTAGGGATATTTTAAATGAACTGAACTCCAAGTTTGAGTTGCTATCGGTCGAGAGGAAGCCGAGGCCAAAGCATGTTGAAGGTCTGGTTGGAGGGAAAGGAAGTTGTGGTGATGAGGCTTCAGAGTTTGGAAGTGCAGGGTCTTCATTTTCTCCACCACAGGAGAGCTTGTCAGATGGTACTATGAATGGTGGGGGTAATATTGAGTATTCGGACGATTCTGTTCAAGAATTGGATCATTTTGAGCCTGAGAATGATGGATCTATAACTTTGAGTGGCCCAAGATCAACTTATGAGTTGCCGGCTAAAATTGCAAAAATGCTGTATCCGCATCAGCGGGAGGGGTTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGTGGAATCTTGGGGGATGACATGGGTTTGGGGAAAACAATGCAGATTTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATTAGAAGGGCATTGGTTGTAGCCCCAAAAACCTTATTGCCCCATTGGATCAAAGAATTGTCAGCTGTGGGTCTGTCTCAGAAAACGAGAGAATATTTTGGAACTTCTACCAAACTCAGAGAATATGAACTGCAGTACATACTTCAGGACAAAGGAGTTCTTTTAACAACATATGATATTGTCCGCAACAATTCTAAGGCCTTAAGGGGGGACAATTATTTTGATGATGAGGAAAGTGAAGATGGCACTACATGGGACTACATGATACTTGATGAGGGTCATCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCACCGCATAATCATTAGTGGCACGCCTTTGCAAAATAATCTTAAGGAGTTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTTGGTGACAACAAATGGTTCAAAGAAAAATTTGAAAAGCCCATACTTCGTGGAAATGACAAACATGCTTCTGATAGGGAGAAGCGCATTGGCTCATCTGTAGCAAAGGAACTAAGAGATTGTATTCATCCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAGTCAAGATGATGAGAAAACAACTGCAAAACTTTCTCAGAAACAAGAGATTATTGTGTGGCTTCGACTGACCAGTGTCCAGCGGTTTCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCTCTGGCTGCTCTTACAATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACACAATGCTAAAGCCAGAAGAGGCAAATGTTGCAGAAAAATTGGCAATGCATATAGCAGATGTTGCTGACGCAGATAAGTTTAAAGATGAGCAAGATGTGTCATGCAAAATTTCCTTCATTATGTCATTATTGGATAATTTGATTCCAGATGGGCATCGTGTGCTTATATTTTCTCAGACTCGTAAGATGCTTAATCTTATTCAGGAATGCCTACTGTCCAAAAGTTATGACTTTTTACGAATTGATGGCACAACAAAAGCCTTTGACAGACTAAAGATTGTTAATGAGTTCCAAGAAGGTGTTGGAGCCCCTATATTTCTCTTGACATCTCAGGTTGGTGGTTTAGGACTAACACTTACACGAGCAGATCGGGTGATTGTAGTTGATCCTGCTTGGAACCCTAGTATGGATAATCAAAGTGTTGATCGTGCTTATCGAATTGGTCAAAAGAAAGATGTTCTTGTATATAGACTGATGACATGTGGAACTGTTGAGGAAAAAATCTACAGGAAACAGGTATACAAGGGGGGATTATTCAAAACTGCTACTGAACATAAAGAACAAATTCGGTACTTTGGCCAGCAGGATCTTAGGGAACTTTTCAGCCTTCCAAAAGAAGGATTTGATGTATCTATTACCCAAAGGCAATTGAATGAGGAGCACGATCATCAACACACAATTCGAGGCATAGCTGGAGTTAGTCACCACAGTTTACTTTTTTCCAAGACAGCGCCCGTCAGAGCTGATCCTGAGGATGACGAAGTTACAAGGAACCATGGAACTAAATATGTTGGAACCTCAAGATCGTCTTCGCATGAACATGCTGCTGATAACTCCCAGTTTGCATTTAATCCTAAGGATGTTAGGGTAAGCAAAAAAGGTTCTTCTCCTAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAAGCGTCTCTCTCAAACACTCTCAAATACGGCGATGATTTCTAAGTTACCTGACAAGGGCTTGAAGCTACAGAAACGGCTTGTGGAGCTGAATTTAGAGCTCGTTGAACTGAACAGGGAAGAAAGAAATGTGGTTGATTTGGATGATTTTACTGCTGAATTTCGACGGGTGTTGAATGTATAGCTTATCCTTTGAAATCATTAAATTATTATAACTAATATTTCTGCAGGTCCGTTTTTCGAAAGGAAATGATTTTGTCGGAACCTACTAGATGGTGCAATTTAGGTTGATGCCTTTCCAATTTGAACATGTTGGTATCCAAATTACTGCAAAAGAAAGGAGAAATAGAAATAT 3410 0.4123 MANSKSTKKPMSLNDSHYRFLQEQDHSAPTKPFRDEESTHENIPHFSAITDFDSPIGLNSDEKLQRNKEQLEEAPSNHIPQFSLNSTPRQNLDEKHEPIRFSQDEEALPQFLVNSTPRQNLHEKHEQIKFQEEEAEEENEEEAPPNDVQQFSVNSTRSQNSDKKHKPMKFQEEEEAPPDAVHFPPMEEKKTKVKVQGRRRLCKVVHEDAGKSVAVDESKFDELIDLDSPVPARRNTIQIEENRGKNEIRDILNELNSKFELLSVERKPRPKHVEGLVGGKGSCGDEASEFGSAGSSFSPPQESLSDGTMNGGGNIEYSDDSVQELDHFEPENDGSITLSGPRSTYELPAKIAKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLPHWIKELSAVGLSQKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKALRGDNYFDDEESEDGTTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEKPILRGNDKHASDREKRIGSSVAKELRDCIHPYFLRRLKSEVFSQDDEKTTAKLSQKQEIIVWLRLTSVQRFLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDTMLKPEEANVAEKLAMHIADVADADKFKDEQDVSCKISFIMSLLDNLIPDGHRVLIFSQTRKMLNLIQECLLSKSYDFLRIDGTTKAFDRLKIVNEFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSMDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFGQQDLRELFSLPKEGFDVSITQRQLNEEHDHQHTIRGIAGVSHHSLLFSKTAPVRADPEDDEVTRNHGTKYVGTSRSSSHEHAADNSQFAFNPKDVRVSKKGSSPSSAGKLTESEIKDKIKRLSQTLSNTAMISKLPDKGLKLQKRLVELNLELVELNREERNVVDLDDFTAEFRRVLNV 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01522 1048 Coils Coil 118 141 - -
Pste3g01522 1048 PANTHER SNF2/RAD54 FAMILY MEMBER 75 987 - -
Pste3g01522 1048 MobiDBLite consensus disorder prediction 272 314 - -
Pste3g01522 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 887 IPR027417 -
Pste3g01522 1048 MobiDBLite consensus disorder prediction 1 194 - -
Pste3g01522 1048 Gene3D - 611 908 IPR027417 -
Pste3g01522 1048 MobiDBLite consensus disorder prediction 159 194 - -
Pste3g01522 1048 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 367 542 IPR014001 -
Pste3g01522 1048 MobiDBLite consensus disorder prediction 923 955 - -
Pste3g01522 1048 MobiDBLite consensus disorder prediction 936 954 - -
Pste3g01522 1048 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 715 874 IPR001650 -
Pste3g01522 1048 FunFam Protein CHROMATIN REMODELING 24 334 612 - -
Pste3g01522 1048 Coils Coil 1008 1028 - -
Pste3g01522 1048 Pfam Helicase conserved C-terminal domain 712 824 IPR001650 -
Pste3g01522 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 592 IPR027417 -
Pste3g01522 1048 Gene3D - 330 591 IPR038718 -
Pste3g01522 1048 SMART ultradead3 350 553 IPR014001 -
Pste3g01522 1048 MobiDBLite consensus disorder prediction 74 89 - -
Pste3g01522 1048 CDD SF2_C_SNF 704 835 - -
Pste3g01522 1048 SMART helicmild6 741 824 IPR001650 -
Pste3g01522 1048 MobiDBLite consensus disorder prediction 289 314 - -
Pste3g01522 1048 Pfam SNF2-related domain 358 662 IPR000330 GO:0005524|GO:0140658
Pste3g01522 1048 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01522 Pste-Chr3 9450720 9467040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01522 710 878 RAD5 or RAD16-like Gene Family AT5G22750 34.911 2.97e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste3g01522 SNF2_N 1.4e-48 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01522 3 9450720 9467040 Pste3g01522 3 9450720 9467040 ECH