Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01517 AAAAGCAATGATTAGAGTTATAAGTCTCTCCTTGCTCTCCCTTCTAACTTTGGCTGCTAGCATTGAAAGTGCCCAAGAAAGAGTGCAACCCAGCTATTATGGTGTTCCATTCAATAGGAGTCTTTTTCCTTCTAGTTTTGTATTTGGAGTAGGCTCTTCTTCTTATCAGAAGGAGCAGCAAAGGTTGATGGCAGAGGACCCAGTATATGGGACACCTTCACTAAACAGCATCCAGAGCGACATAAAGGTGGTGAAAGAAATTGGGTTGGATTCATTTAGATTTTCCATCTCGTGGTCCAGAATATTCCCCAAGGGCAAGGGAGAAGTTAATGCCTTGGGGGTTAAATTCTACAACAATCTCATTAATGAGATCCTATCAAATGGCTTAACACCTTTTGTTACTCTCTTTCATTGGGACCTCCCACAAGCTCTTGAGGATGAATATGGAGGATTTCTTAGTCCTAAAATAGTGGATGATTTTGGTTACTATGCTGATTTTTGCTTCAAGACCTTTGGAGATCGAGTGAAGAATTGGGTGACTCTAAATGAACCACTCTCCTTCAGCATCAATGGCTACCATGGTGGCACATTTGCACCAGGTAGATGTTCTAGCTATGTTGGGAATTGCACTGTTGGTGACTCAACCACAGAACCATACATTGTTGCCCACCACTTAATACTTGCTCATGGAGCAGCAGCCACTTTGTACAAGAAGAAATACCAGGCTCATCAAAAGGGACAAATTGGAATCACCTTAGTCACTCACTACTTTGAACCAAAATCTAATACTGAAGCCGATCGCAAAGCAGCAAGTTTGCTAATCCCACTCCCCGAATTCACGAAACTTCAATCGCAAACTCTTAAAGGTTCATATGATTTTCTTGGTGTCAACTATTACACCACATATTATGCAGAACATATTTCACCTACCAATGTTAACAGAACCTACTACACAGATATGCAAGCCAATGTTTCTCCACTGAGGAATGGTCTAGCCATTGGTACACCGACTGCTCTAAGCTGGCTCTACATCTATCCAAAGGGAATTCATCAACTCCTGAAATATGTAAAGAATAACTTCAATAATCCACCAATTTACATCACAGAGAATGGCATTGCGGAAGCAAGGAATGACTCAATTCCAATAAGTGAAGCCCGACAGGATAGTATTAGGATTAGATACCATGATGGCCATCTCAAATCCCTACTTGAAGCGATCAAAGATGGTGTTAATTTAAAGGGGTATTATGCATGGTCATTTTCTGACAGTTTTGAATGGGATGCTGGTTACACAGTTAGATTTGGCCTCATATATGTGGATTACAAGAACAAATTGAAAAGATACCCTAAGTTCTCTGCTTTTTGGCTGCAAAAGTTCCTTCTCAAGTGATCTATTTTTATTGTTACTTTGCCATGCATAGGGTGTTTCTTGTTTATTAATTTCCTAGATATCATCATGCCATGGTGTATCACACGTTTCGAGTCAATGTAATCAAGAAATCTTAGATATCAAATAAATAATGCCTAATGGCATTTGTTGATTTAGAATTGAAATCTTTTGATGGAGTACACGGTATCATTGTTTGGGTAGTAGATTATGAGATGTTGAAGTATTTTATATAGGTCAAATAAGTTAG 1637 0.3916 MIRVISLSLLSLLTLAASIESAQERVQPSYYGVPFNRSLFPSSFVFGVGSSSYQKEQQRLMAEDPVYGTPSLNSIQSDIKVVKEIGLDSFRFSISWSRIFPKGKGEVNALGVKFYNNLINEILSNGLTPFVTLFHWDLPQALEDEYGGFLSPKIVDDFGYYADFCFKTFGDRVKNWVTLNEPLSFSINGYHGGTFAPGRCSSYVGNCTVGDSTTEPYIVAHHLILAHGAAATLYKKKYQAHQKGQIGITLVTHYFEPKSNTEADRKAASLLIPLPEFTKLQSQTLKGSYDFLGVNYYTTYYAEHISPTNVNRTYYTDMQANVSPLRNGLAIGTPTALSWLYIYPKGIHQLLKYVKNNFNNPPIYITENGIAEARNDSIPISEARQDSIRIRYHDGHLKSLLEAIKDGVNLKGYYAWSFSDSFEWDAGYTVRFGLIYVDYKNKLKRYPKFSAFWLQKFLLK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01517 460 SUPERFAMILY (Trans)glycosidases 32 458 IPR017853 -
Pste3g01517 460 ProSitePatterns Glycosyl hydrolases family 1 active site. 363 371 IPR018120 -
Pste3g01517 460 Gene3D Glycosidases 273 460 - -
Pste3g01517 460 Gene3D Glycosidases 21 272 - -
Pste3g01517 460 PRINTS Glycosyl hydrolase family 1 signature 431 443 IPR001360 GO:0004553|GO:0005975
Pste3g01517 460 PRINTS Glycosyl hydrolase family 1 signature 407 424 IPR001360 GO:0004553|GO:0005975
Pste3g01517 460 PRINTS Glycosyl hydrolase family 1 signature 363 371 IPR001360 GO:0004553|GO:0005975
Pste3g01517 460 PRINTS Glycosyl hydrolase family 1 signature 288 302 IPR001360 GO:0004553|GO:0005975
Pste3g01517 460 PRINTS Glycosyl hydrolase family 1 signature 386 397 IPR001360 GO:0004553|GO:0005975
Pste3g01517 460 Pfam Glycosyl hydrolase family 1 72 269 IPR001360 GO:0004553|GO:0005975
Pste3g01517 460 Pfam Glycosyl hydrolase family 1 274 457 IPR001360 GO:0004553|GO:0005975
Pste3g01517 460 FunFam Beta-glucosidase 12 69 272 - -
Pste3g01517 460 PANTHER GLYCOSYL HYDROLASE 72 269 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01517 Pste-Chr3 9411127 9420284 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01517 2 458 Glycoside Hydrolase AT5G44640 44.204 1.20e-143 419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01517 3 9411127 9420284 Pste3g01517 3 9411127 9420284 ECH
Pste3g01517 3 9411127 9420284 Pste1g00357 1 1259821 1272447 PCT