Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01490 CTCTTACTTACTCTATCCCTGCAAAACCAAAACCTCAATTCCTCTGTCCTCTGTAACATCCTCGTCACTCTCACACAACGAACAGCAACAACAACAACAATAACAATGGCTTCTCTTCACTCTTCTCTGCTCTCACCACCCAATCTCCTCTCTCTCACAACCCCATCAACTTCCTCAACCCAAATTCTCTTCAACGTGAGACCCTCTTCCACCCACTTGCCACCCCTTTTCACCACACGACGCCGTTTGGGGACACCCTTTGCGGTGGTGGTGGCTGAGCAAGCCACTGTGCCTGGCGCCGAGAGGAGGCTCTACGTTGGCAACATTCCCTGCACTGTCACCAACGATGAGCTTGCCAAGATTGTTGAAGAGCATGGTGCTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGCTTTGCATTTGTTACAATGAAATCTGTTGAGGATGCAAATGTTGTGATTGAGAAACTTAATGGCATTGAAATTGGAGGGCGTGAGATCAAAGTAAATATAACCGAAAAACCTTTATCAACCCCAGATTTGCCTTTACTCCAAGCCGAGGAATCTCAATTTGTTGACAATCCCCACAAAGTGTATGTGGGAAATCTGGCCAAGACAGTAACAACTGATACTCTTAAAAACTTTTTTTCTGAGAAGGGAAAAGTTCTTAGTGCCAAGGTTTCACGGGTCCCTGGTACCTCAAAATCAAGTGGGTATGGTTTTGTTACTTTTTCATCAGACGAGGATGTAGAAGCTGCAATCTCATCTTTCAACAATGCTTTGATGAGGTTTTATGAAAAATGTGTGGTTCTTGCTTCTGTTGCAGACACTGCACCTTTAGTCCAGGATATTGATACAATGAAACCTCACTATTTTGTCATGATTATGTTGTTGCTCCCTTTTACTCTGCTCCAATGTCGCAGTTCTTGTTGA 951 0.4416 MASLHSSLLSPPNLLSLTTPSTSSTQILFNVRPSSTHLPPLFTTRRRLGTPFAVVVAEQATVPGAERRLYVGNIPCTVTNDELAKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKSVEDANVVIEKLNGIEIGGREIKVNITEKPLSTPDLPLLQAEESQFVDNPHKVYVGNLAKTVTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSDEDVEAAISSFNNALMRFYEKCVVLASVADTAPLVQDIDTMKPHYFVMIMLLLPFTLLQCRSSC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01490 281 Gene3D - 155 248 IPR012677 -
Pste3g01490 281 FunFam 30S ribosomal protein 2, chloroplastic 154 241 - -
Pste3g01490 281 PANTHER OS02G0815200 PROTEIN 62 231 - -
Pste3g01490 281 SUPERFAMILY RNA-binding domain, RBD 63 146 IPR035979 GO:0003676
Pste3g01490 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 139 IPR000504 GO:0003723
Pste3g01490 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 231 IPR000504 GO:0003723
Pste3g01490 281 SUPERFAMILY RNA-binding domain, RBD 160 233 IPR035979 GO:0003676
Pste3g01490 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Pste3g01490 281 SMART rrm1_1 168 243 IPR000504 GO:0003723
Pste3g01490 281 SMART rrm1_1 68 141 IPR000504 GO:0003723
Pste3g01490 281 Gene3D - 56 151 IPR012677 -
Pste3g01490 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 248 IPR000504 GO:0003723
Pste3g01490 281 CDD RRM1_PSRP2_like 68 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01490 Pste-Chr3 9229965 9235270 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01490 69 271 Eukaryotic Initiation Factors Gene Family AT2G23350 32.701 4.90e-20 87.8