Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01478 TGTGATGGTCAAATATGGTTTGGAAATGGTGAGAAAGAATTTGCAGAGTTTCACTCTCTAGCTCATGGGTATCTTTTGGTTTTCGAATTTGAAAAAGCATCCCATCTTCGAATACACATATTTTATCTGTGTGCCTTAGAGATAGACTATCTGTTAAAAAAATGGGAGAATCACACACTAGGTCGAAAGAGAAAAGATAATTACTCTAGTAACTTGATTTTGTCAGAGAATACTCTGGATCCAATTGACACAAAATGTAAAGGCAAGGCAAGAATAAAATTTAGACTCTCAAGTGGATGGATTGCATTTAGCCATAACAACAACTTGAAAGTTGGTGATGTTTGCACCTTTGAGCACATTCATAATACTTCTAACTTTCCTAGTTGA 387 0.3514 CDGQIWFGNGEKEFAEFHSLAHGYLLVFEFEKASHLRIHIFYLCALEIDYLLKKWENHTLGRKRKDNYSSNLILSENTLDPIDTKCKGKARIKFRLSSGWIAFSHNNNLKVGDVCTFEHIHNTSNFPS 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01478 128 CDD B3_DNA 86 126 IPR003340 GO:0003677
Pste3g01478 128 Gene3D - 1 44 IPR015300 -
Pste3g01478 128 Gene3D - 49 126 IPR015300 -
Pste3g01478 128 SUPERFAMILY DNA-binding pseudobarrel domain 93 123 IPR015300 -
Pste3g01478 128 PANTHER B3 DOMAIN-CONTAINING 1 122 - -
Pste3g01478 128 SUPERFAMILY DNA-binding pseudobarrel domain 2 41 IPR015300 -
Pste3g01478 128 Pfam B3 DNA binding domain 85 126 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01478 Pste-Chr3 9157076 9160125 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01478 4 58 B3 DNA Binding Superfamily AT1G49475 41.818 3.48e-08 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste3g01478 B3 1.3e-07 CL0405