Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01461 TTCATGCTTCTGTTTTGTGCACCGTGCTAAACTAGTATGTTTTTTCTTCCTTTACTCCTCATTTGTTAACTTGATATACAAATACTAGCTAATTTCTTGTTACTTAGATACATTAAACACAAACATGTCTACACCCATTTTGACTGAAAATTCATGGACACTCTAATAAATTCCATGTTCACTGTTCTTGCAACTGCCTTGCTTGGGAACACACTCCCTTTTTACCTGAATATTAGTTTCTTAAGCTGTTATGTTCTAAGTTGGTTTCTTAAGCTTTTATGTTGTGTGTTGTATCTCTCGATCTCACATTCATCTTTGAAAACAAGCTAGGAGTTGTTGTAATGTTATTAAACTGGTGATTTTTTCGCTGTGGAAAGGGACACGACCAGGTGAGTTTTCCTTGGAGATCAAACAAGTTAATATGTTTCGCCCAAATTATAGCAGCGGTCCTCTCAAAATATTGACGAGGTGGCTCATATTCATTATTATCTTGAAAGTCAGTTTTGCTATCAAAGATCCTGATGTGGAAGGTGAGGCTCTGCTTGATCTTTTGCATTTGCTCAATGATACAAATAAGCAAATAGATTGGGACAGTCATTTCGTGAGCCCGTGCTTCAGTTGGTCTCATGTCACTTGTAGAAACGGGCATGTCATATCACTGGCCCTGGCTTCGGTTGGATTTTCTGGAACACTATCTCCCTCAATTACCAAATTAAAATATTTGGTTAGCTTGGAATTGCAGAACAACAATCTTTCAGGATCCCTGCCTGATTACATTTCCATCTTGACAGACCTACAATATCTAAATCTTGCTGACAATAATTTTAATGGTCCTATACCAGCTAAATGGGGTGAACTATCCAATCTAAAGCATCTGGATCTTTCATCCAACGGTCTTACTGGAAGTATCCCGATGCAACTATTTTCAGTTCCAATGTTTAACTTTTCAGATACGCACCTTCATTGTGGATCTGGCTTGGATCAGCCTTGCGCTTCTAAATCTGAAAATTCAGCTTCGACCCACAAATCAAAAATGGCAAAAATTGTACGTTATGCAAGTTGTGGTGCATTTGCACTTTTATGTCTTGGAGCTATCCTTACGTATGGACACCATCGAATGCAGAGGCGCAAAAGTGATGTCTTTGTTGATGTTTCCGGGGAAGACGAGACCAAAATTTCTTTCGGGCAATTGAGAAGATTTTCTTGGCGTGAAGTTCAACTTGCAACTAAAAATTTCAGTGAAGGCAATGTAATTGGTCAGGGTGGCTTTGGAAAAGTGTACAAAGGAGTACTCTCTGATAACACAAAAGTCGCTGTGAAACGCCTCATTGATTATCACAATCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCAACTAATAAGTGTTGCAGTTCATAGAAACCTCCTGAAACTAATTGGCTTCTGCACAACCACAACTGAAAGAATCCTTGTATACCCTTTTATGGAAAACCTTAGTGTAGCATATCGTCTAAGAGATTTAAAACCTGGTGAGAAAGGCTTGGACTGGTCAACAAGGAAACGTGTGGCTTTTGGCACAGCCCATGGTTTAGAGTATTTACATGAGCAATGCAATCCTAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTTCTAGATGATGAATTTGAAGCTGTTTTAGGTGATTTTGGGCTAGCCAAGCTGGTTGATGCAAGTATGACTCATGTGACCACTCAAGTGCGCGGCACAATGGGTCACATTGCCCCAGAGTATTTGTCCACTGGAAAATCTTCAGAGAAGACTGATGTTTTTGGATATGGCATAACACTTCTTGAGCTAATCACTGGTGAGCGTGCAATAGACCTCTCACGACTTGAAGAGGACGAGGATGTTCTTCTGATTGATTATGTGAAAAAGCTGCTGAGAGAAAAAAGGTTGGAGGACATTGTAGATAGAAATTTGGGAAGTTATGATCCAAAGGAAGTTGAGACCATTCTGCAGGTTGCATTGCTTTGCACCCAAGGCTATCCTGAGGATCGTCCAACCATGTCAGAGGTAGTAAAAATGCTGCAGGGAGTGGGGTTGGCAGATAGATGGGCTGACTGGCAGCAACTTGAAGAGGTCAGGAACCAAGAATTCTCACTCATGACACACCAATTTGTTTGGAATGATGAATCTACACTTGATCAAGAGGCCATACAGCTTTCCAGGGCAAGATAAGCAGAGCTGGAGAGTCAATTTTGAGATGTGGTAGCTTCTTATGGCATAGAATATATATATAATATATACATACACTATAAAGAAAAATGTATAAGTACATAAAAAGGCCTGTGTTTATATAATGTTTGGTGTATTACAGAAAAGAAAGGAAAGGAATGGGCGGGGGTGCACAGGCAACATATTTGAACAGGAGAAAATTCAGGTTGCATTATGTATATCACAACTATGTATCGCTTATGTAGCCTTGGAAATGCCTTGCACATGTATGATGTATTAATTGCTATAATACTTCTTTCCTAGTTTTCTATTTTC 2518 0.3959 MFRPNYSSGPLKILTRWLIFIIILKVSFAIKDPDVEGEALLDLLHLLNDTNKQIDWDSHFVSPCFSWSHVTCRNGHVISLALASVGFSGTLSPSITKLKYLVSLELQNNNLSGSLPDYISILTDLQYLNLADNNFNGPIPAKWGELSNLKHLDLSSNGLTGSIPMQLFSVPMFNFSDTHLHCGSGLDQPCASKSENSASTHKSKMAKIVRYASCGAFALLCLGAILTYGHHRMQRRKSDVFVDVSGEDETKISFGQLRRFSWREVQLATKNFSEGNVIGQGGFGKVYKGVLSDNTKVAVKRLIDYHNPGGEAAFEREVQLISVAVHRNLLKLIGFCTTTTERILVYPFMENLSVAYRLRDLKPGEKGLDWSTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDASMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELITGERAIDLSRLEEDEDVLLIDYVKKLLREKRLEDIVDRNLGSYDPKEVETILQVALLCTQGYPEDRPTMSEVVKMLQGVGLADRWADWQQLEEVRNQEFSLMTHQFVWNDESTLDQEAIQLSRAR 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01461 594 Pfam Protein kinase domain 273 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g01461 594 Pfam Leucine Rich Repeat 148 164 IPR001611 GO:0005515
Pste3g01461 594 ProSiteProfiles Protein kinase domain profile. 272 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste3g01461 594 FunFam Somatic embryogenesis receptor kinase 1 241 348 - -
Pste3g01461 594 ProSitePatterns Protein kinases ATP-binding region signature. 278 300 IPR017441 GO:0005524
Pste3g01461 594 Gene3D Transferase(Phosphotransferase) domain 1 349 565 - -
Pste3g01461 594 SUPERFAMILY L domain-like 37 171 - -
Pste3g01461 594 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 18 555 - -
Pste3g01461 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 395 407 IPR008271 GO:0004672|GO:0006468
Pste3g01461 594 FunFam Somatic embryogenesis receptor-like kinase 1 349 565 - -
Pste3g01461 594 Gene3D Phosphorylase Kinase; domain 1 241 348 - -
Pste3g01461 594 SUPERFAMILY Protein kinase-like (PK-like) 251 546 IPR011009 -
Pste3g01461 594 Gene3D Ribonuclease Inhibitor 33 199 IPR032675 -
Pste3g01461 594 FunFam Probable LRR receptor-like serine/threonine-protein kinase At5g63710 34 192 - -
Pste3g01461 594 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Pste3g01461 594 SMART serkin_6 272 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01461 Pste-Chr3 9081802 9088347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01461 33 594 Receptor kinase-like Gene Family AT5G10290 55.688 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pste3g01461 Pkinase 2.3e-43 CL0016