Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01433 ATGCCGCTATTAAGGAGAAAGCCTTTTGCCTTGGCCGAGACTCCTGAGGATTTGAAGCCAGACGAGCCTGTTTACCAAATTCGATTTACGAAAGATATCCTTCGAGATTATCAGTATCCTATACATAGTGATTATTTGAAGCGATTGAATCTATACCGCCGGAGGATTTGGATGTGCAAAGTCACTGGAAAAACTGGCTTGACTTATGAAGAGGCTTTGGTGTCTGAACAGCATGCTACTGAGAAAGTTCAACAGTTTCCTAAAGAATTAGCAACTATTGCTTTAAGGACTATTCAATACAGTATGCTCCCTTTGAAGGTTCTTGCAGATTCTATTGGTGAAAAATTGCAGGAATGTTTGTTTGTGGGTGCCGAACTACATGGGAAAAAGGATGGTGGAGCGCATCCATGCAAAATACTAAAGGTTATTCCGAAAGGAGTTGACACATTCTGTTATGTGGTAGCTTGGCTTGACAAAAACAAGACTATAATTGAACAAGCAGAAGTTAGTGCAGAAGATTTGGTGCATAAGAAGCCGCTTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGCGAGTCTACATATCGGAATGCCCCTTGGGTTTTACATGATGAACTGGCAAAAAATCATGGAATATCAACTGACATTCCTGAGGAGTTAAGAGGAAGGTTTTCTTACAAAGATGGGCTTTTAATTTGCTCCAAGAAAAGGAAAAATGAGGAATCGCCGGAAGACACTGATAACTGTAAAAGGAAGAGGTTGGATGGAACACAAGTTGACGATTCTGGCCATGAGAAAGAAAATGGTCAACACAAGGATGAAGCAATCAAATATCCCATTGATGATCTATTGGTTAAGCTTAGTCCAGAGGATCCTGTTTTCACTGATCGTCCTTCTCCATCAAAAGACTTCAACATTCCAATGAGTTGTGTAGGGAATCTCTTAATGGTTTGGGATTTTCTTACTTCCTTCGGTAGACTGTTGTACCTGTCGCCCTACTCTCTAGCAGATTTTGAAAATGCTATCTGCCATAAGGATAGCAACGTGGTTCTCCTTGTGGAGTCTCATGCAGCACTTCTTCGACTTCTCATCAAAGATGATGACGAATACTCTTTGGCTGTGAAGAACCGAAAATTGAAATCTAAGATTACAATGATTAATTGGACAGAATATTTATGCTACTTTCTAGAGATGATCAATATTCCTGAACTACAACACCGTGAAGCAACTATAAAACGGGGACATTACGGCCTTTTGGATGTCAGTACCAAATTAGAAATCTTAGGTAACTTGGTCAATCGAGCCCTTGAAACTGCAATTTTCAGGGGAAAGTTAGATGAGATTATTGAAGAGCGACATGCACTTGGAGCCACTAGAAGGGAAGAAGCATTGGAAGATGGTAAGAGGAGAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAGTCAGAAAGCAATGGATATGTGGATGGGCATCATCTGAAGGGTGCAAATATCCTAACAAACAATAATCACAGTATACAGAATGGATATACAGGAGAGAAGAAAATTATTGAGATATCTGAGCAAAATGATCCACTGGCTAGCAGTGGGATGGGGCATTTAATTCCTGCTTCTAGAAAGACACGTAAGATGTTAGATTCAGAGCTTAAAGAACTAATGGAAACTGGAAAAGAATTATCCAGAAAGGAATTACCAAAACAGTTGAAGGCTGATAAGGATCCACCAGAAAAGAATAGTAAAGATCAGAGGAAACAATACTTCGAACGGGAGATGGAGAAGCGATTTATTCGTAGAAGCCCATTAGGTAAGGACAGAGATCACAATAGGTATTGGTGGTTCCGTCGTTATGGGAGAATATTTATTGAAAGCTGTGACTCCAAGGAGTGGGGATACTACAGCAGTAGGGAAGAGGTTGATGCATTGATGAGTTCTCTGAATTGCAAGGGTGAGCGGGAAAGGGCATTGCGAAAGCAACTAGAAAAATATTATAATAAAATATGCTCAGAACTGCAGAAAAGATCGAAGGAATTGATGCACAGGATTATAGATGAGTCTGTGCTTCGAAGGTCTACTCGTGTTACAGCTCAGCCTAAGATGAACCCTGCCAATGCTTTCCTTAAATATGTTAACAAGTTGAAAGAAGAATAGGTGACGAAAGTTAACCTTCAAACAAATGAAACCTGGGACTTTTAAAGGAGCCAGTTTGATTCATTACCTGACAGTAATAGGGATTAAGTAGTTTTCCAATCCTTGAAGCAAAAAAAAAAAAAAAAGTTTTCCGATCCTGAAGAGAAAAGAGTTTCCGAATTTTCAGATGACGGACAAGCATGCTATGTATGCTTGTTTCAGAAATTTTGTATATGATTTGTTCAATTCTTCAATCATATTTGAAACAGGCAAAATAATATCTTTTTACTACCAATTCTATTCATTAGTCATTACATATGGTAGCCAGGATAGGTTATTCCAATACTAATTGATGAACTGAATTGTAAAATTAGTTGAATTGAATTGATGTGCACAATAGTTTG 2528 0.3865 MPLLRRKPFALAETPEDLKPDEPVYQIRFTKDILRDYQYPIHSDYLKRLNLYRRRIWMCKVTGKTGLTYEEALVSEQHATEKVQQFPKELATIALRTIQYSMLPLKVLADSIGEKLQECLFVGAELHGKKDGGAHPCKILKVIPKGVDTFCYVVAWLDKNKTIIEQAEVSAEDLVHKKPLFSRNILKSFIRESTYRNAPWVLHDELAKNHGISTDIPEELRGRFSYKDGLLICSKKRKNEESPEDTDNCKRKRLDGTQVDDSGHEKENGQHKDEAIKYPIDDLLVKLSPEDPVFTDRPSPSKDFNIPMSCVGNLLMVWDFLTSFGRLLYLSPYSLADFENAICHKDSNVVLLVESHAALLRLLIKDDDEYSLAVKNRKLKSKITMINWTEYLCYFLEMINIPELQHREATIKRGHYGLLDVSTKLEILGNLVNRALETAIFRGKLDEIIEERHALGATRREEALEDGKRRREEKERLKAESESNGYVDGHHLKGANILTNNNHSIQNGYTGEKKIIEISEQNDPLASSGMGHLIPASRKTRKMLDSELKELMETGKELSRKELPKQLKADKDPPEKNSKDQRKQYFEREMEKRFIRRSPLGKDRDHNRYWWFRRYGRIFIESCDSKEWGYYSSREEVDALMSSLNCKGERERALRKQLEKYYNKICSELQKRSKELMHRIIDESVLRRSTRVTAQPKMNPANAFLKYVNKLKEE 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01433 714 MobiDBLite consensus disorder prediction 240 272 - -
Pste3g01433 714 SMART testlast3 308 369 IPR018501 -
Pste3g01433 714 Coils Coil 541 561 - -
Pste3g01433 714 MobiDBLite consensus disorder prediction 459 487 - -
Pste3g01433 714 Coils Coil 460 484 - -
Pste3g01433 714 ProSiteProfiles DDT domain profile. 308 369 IPR018501 -
Pste3g01433 714 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 125 IPR013136 -
Pste3g01433 714 MobiDBLite consensus disorder prediction 556 584 - -
Pste3g01433 714 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 595 661 IPR028941 -
Pste3g01433 714 MobiDBLite consensus disorder prediction 459 488 - -
Pste3g01433 714 ProSiteProfiles WAC domain profile. 22 132 IPR013136 -
Pste3g01433 714 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 712 - -
Pste3g01433 714 Pfam DDT domain 309 366 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01433 Pste-Chr3 8865419 8871187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01433 576 660 Homeobox Transcription Factor Family AT1G28420 39.362 1.13e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pste3g01433 WAC_Acf1_DNA_bd 8.1e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01433 3 8865419 8871187 Pste3g01433 3 8865419 8871187 ECH
Pste3g01433 3 8865419 8871187 Pste2g00062 2 206285 209658 PCT