Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01421 ATGAAGGAAGAAGGGATGGCAGCAGTTGTTGCCACTAAGGTGGAGGGAAACAGGTTTGGGAAGGGTGGCTGTTGTTGGGATTGTTGCAACTATGGATACCCCAAAAATGGAGAAGGTTATAGGGGCATAGGTAAGAAGGAAAACTCATTGGTGATCCAAACCATCAAAGCCTTCACTATGACAGATCCTAAGTCCAATTTATACACTGGAGCCTTCAACTTCATGCCTCTCTATTCTCACCACTCTTCTTTCACTTCTTCTTATTACCCTTTTGCATACTCAAATAGCACCAACAACACTTTCTCCATTGATAATCAATCTCAAACTTCTTGTGCAACCCCTCCCTCTCCTCCTCTCAGAGAAGCCCTTCCTCTCATAAACAACATAAGCATCACTAAACAGAAGGAAAGTAATAATAATGAACCCTCAGAGGGTGGTGGTGGTGAAGAAGTTCAAGAGGAATTGGGATTAGGACAAAAGAAAAGGGATCACAAAGATGAAAGGCTTAGTACTGAAGAGGTTGATGATCATGAAACTGTGACTGTAGCACTGCGCATAGGGCTTCCTAGTGTGGCTTCTGCTGCAGCTTCTGATGTTGTGGGATCAAGGAATAGCAAGATCTCAGCTTGTGAATTCATGAGTGAAAAAGGGGATGTGAGTGTGATTTCTGGACTCCCTTTGGAGAGATTAAGCAAGGTTCAGTATTGGATCCCCACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTTGTGTTCTGTGTGCTCTAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCACAATATAGAAAGGGGCCAGATTCTCTAAAAGGAACACAACCATCAGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGATCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTCCAAACACATTACAAGAGAAAACATGGCATTAAACCCTACATGTGCAGAAAATGTGACAAAACATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAAAACTGTGGCAAAATTTGGTACTGTTTATGTGGGTCTGATTTTAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGCCACGGAGCTGTTGACATTGATTGCATGCAAGAAGATGAAGCTGCCTCAGAAATTGAACATGATGGAGATAGCTCGATGTGA 1233 0.425 MKEEGMAAVVATKVEGNRFGKGGCCWDCCNYGYPKNGEGYRGIGKKENSLVIQTIKAFTMTDPKSNLYTGAFNFMPLYSHHSSFTSSYYPFAYSNSTNNTFSIDNQSQTSCATPPSPPLREALPLINNISITKQKESNNNEPSEGGGGEEVQEELGLGQKKRDHKDERLSTEEVDDHETVTVALRIGLPSVASAAASDVVGSRNSKISACEFMSEKGDVSVISGLPLERLSKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCDKTFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEAASEIEHDGDSSM 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01421 410 MobiDBLite consensus disorder prediction 130 176 - -
Pste3g01421 410 Gene3D Classic Zinc Finger 313 391 - -
Pste3g01421 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 277 IPR013087 -
Pste3g01421 410 SMART c2h2final6 360 383 IPR013087 -
Pste3g01421 410 SMART c2h2final6 334 354 IPR013087 -
Pste3g01421 410 SMART c2h2final6 250 272 IPR013087 -
Pste3g01421 410 MobiDBLite consensus disorder prediction 130 145 - -
Pste3g01421 410 ProSitePatterns Zinc finger C2H2 type domain signature. 252 272 IPR013087 -
Pste3g01421 410 PANTHER ZINC FINGER PROTEIN WIP2 85 403 IPR043584 GO:0003700|GO:0010468
Pste3g01421 410 FunFam Zinc finger protein WIP2 303 385 - -
Pste3g01421 410 MobiDBLite consensus disorder prediction 154 176 - -
Pste3g01421 410 SUPERFAMILY beta-beta-alpha zinc fingers 318 354 IPR036236 -
Pste3g01421 410 Gene3D Classic Zinc Finger 249 272 - -
Pste3g01421 410 SUPERFAMILY beta-beta-alpha zinc fingers 244 272 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01421 Pste-Chr3 8816210 8824531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01421 60 403 C2H2 Transcription Factor Family AT3G57670 51.989 6.08e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste3g01421 zf-C2H2_6 2.5e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g01421 3 8816210 8824531 Pste3g01421 3 8816210 8824531 ECH
Pste5g00373 5 2467668 2470271 Pste3g01421 3 8816210 8824531 ECH
Pste4g03011 4 21492098 21494529 Pste3g01421 3 8816210 8824531 ECH
Pste3g01421 3 8816210 8824531 Pste1g02194 1 7249620 7251980 PCT