Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g01420 TTGATAAAGAAGATTGATGAAATCAGCATTCTATGTGGAATTGAAACATGTGCTATAATCTATACTCCAAATAATCCTTGGCCAGAGGTTTGGCCATCTGATTGGGGAGTACAAAGTGTGCTTTCTAGGTTTAGAACAGTGTCTGAATTGGAACAAGGTAAAAAAAAATTGTGTCAAGAGAGCTTTTTGAGGCAAAGGATCACCAAAGCCCAAGTAAAACTGAGAAAACTAAGGAATGAAGCCAAGAGGAAAGAGGTGATCCTTCATATGTTTCAATACCTTGGTGCTAGGAACAATTTTAACACTGGCAACATGATTAATTTTAATGATATCTCAAACTTAATTGATCAAAACATGGAGGAAGAAAATCATATCAGCCAAGACCATGAGGAGAATCTAGTTGTTGAAAATGGAGGAGAAACCATGAGTAAAGGAGACCAAGCACTTGTCAATCATGTTCAATTCAAGGATCAGGGATCAATGTGGATGTCAAGCAAAAAG 501 0.3693 LIKKIDEISILCGIETCAIIYTPNNPWPEVWPSDWGVQSVLSRFRTVSELEQGKKKLCQESFLRQRITKAQVKLRKLRNEAKRKEVILHMFQYLGARNNFNTGNMINFNDISNLIDQNMEEENHISQDHEENLVVENGGETMSKGDQALVNHVQFKDQGSMWMSSKK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g01420 167 Coils Coil 60 87 - -
Pste3g01420 167 FunFam Agamous-like MADS-box protein AGL80 1 71 - -
Pste3g01420 167 SUPERFAMILY SRF-like 1 54 IPR036879 GO:0003677|GO:0046983
Pste3g01420 167 Gene3D - 1 70 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g01420 Pste-Chr3 8798923 8799431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g01420 5 123 Type I MADS-box Gene Family AT5G48670 44.538 1.02e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste3g01420 SRF-TF 1.8e-05 No_clan