LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g01409	GAAAGGTGTCCCTGTCCTGTCCCCTACAGCATCGGCGTTGTAAGAGATCCCATTCCAAATACCAATTCCAAATTTCCAATCTCAATTTCAATTCTCAGTTTCACAACTCAAACCAAAAACCAAAATCAAAAGGGCACTCACTAATTAACTGGATTCAAGCTGCTTCCTCTTCCTCTTCTTCATGTTCATTGATTGGATCCCATCCCACCCCTATTTTCTAATGCTTTCTCTCTCACTCTCCCACGTGCACTTTCCTCTTCTCCGCTCTAAATAATTCTTCATTCCCACCGTTCTCTCTCCATAATATACATTATTATATGTGTGTGCAAAAAAAACCGTTTTTTTCAGTGAAAGCGACCACCTTTAAATTGCCCTTTTGATCAGAGAGTAAAATGATGTTCTGATTCTACAAGGGTCTTGCAAGCCCCTTTGAGTTTCAGGTTTGAATCCTTTCCAAAATCCATTACCATAGCTGATAGCATCTTTCGTTGAGTCGAGGGATTTGAATATGGATAAGTACGAGGCTGTCAAAGATTTGGGAGCTGGGAATTTTGGGGTGGCTAGGCTCATGAGGAACAAGGAGACCAAGGAGCTTGTTGCCATGAAATACATCGAGCGCGGCCAAAAGGTGGTTTTGACCCCCACTCATTTAGCCATAGTGATGGAGTATGCAGCTGGAGGAGAGCTTTTTGAGAGGATATGCAATGCTGGAAGGTTCAGTGAAGATGAGGCAAGATATTTCTTTCAGCAGCTGATTTCGGGTGTCCATTACTGTCATGCCATGCAAATATGCCACAGAGATTTGAAGCTAGAAAACACCCTTTTAGATGGAAGCCCTGCACCCCGCTTGAAAATTTGTGACTTTGGTTATTCCAAGTCATCTTTGCTTCATTCACGACCCAAATCAACTGTTGGAACTCCAGCTTATATAGCACCAGAAGTTCTTTCCAGAAGGGAGTATGATGGCAAGTTGGCTGATGTATGGTCTTGTGGAGTGACTCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGACTGCAGACACCTCCTTTCTCGAATATTTGTAGCAAATCCATTAAGGAGAATCACTCTTAAGGAGATTAAGAACCACCCATGGTTTTTAAAAAATCTTCCAAGAGAGCTAACTGAATCAGCTCAAGCTGTCTATTACCAGAGAGGCAACCCAAGCTTTTCTGTTCAAAGTGTGGAAGAGATAATGAAAATTGTAGGAGAGGCAAGGGACCCACCTCCAGTATCTAGGCCTGTCAAAGGTTTTGGCTGGGAAGGCGAAGAAGATGAAGGGGAAGAAGATGTGGAGGAGGAGGAGGAGGATGAAGAAGATGAGTATGACAAGAGGGTCAAAGAGGTTCATGCAAGTGGGGAATTTCAAATCAGTTAAGCAGTATAATTCTTGTGTACTTGGATAAAGTATTATTTTTTTTTATGCTAGAAGTCACCTATTTATGTGTACTATAATTTATAATAACTACTATAAACCAGAGGCAGTCTAACTTGTGGCACTGTCCATGTAATGTATTAGTATTACCTGTATCACCATGGTAGCCGTGTATGAGAACAGTAGTTGTCCGATAACTTTAAAATTACTCATGCCTGTTATATCCACATAGTAAAGCTAAAAATGCTTTTTAATAGTGGATGATGAAAGAGTGGCCTCAGCCTGCCATGTATTGTGTCTAAAGTTCGGGTGGTTTTGACTTACTTTGAGAG	1821	0.4119	MDKYEAVKDLGAGNFGVARLMRNKETKELVAMKYIERGQKVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRRITLKEIKNHPWFLKNLPRELTESAQAVYYQRGNPSFSVQSVEEIMKIVGEARDPPPVSRPVKGFGWEGEEDEGEEDVEEEEEDEEDEYDKRVKEVHASGEFQIS	327

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g01409	327	PANTHER	SERINE/THREONINE KINASE	3	270	-	-
	Pste3g01409	327	MobiDBLite	consensus disorder prediction	291	311	-	-
	Pste3g01409	327	ProSiteProfiles	Protein kinase domain profile.	1	235	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g01409	327	Gene3D	Transferase(Phosphotransferase) domain 1	55	243	-	-
	Pste3g01409	327	Pfam	Protein kinase domain	41	235	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g01409	327	SMART	serkin_6	4	235	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste3g01409	327	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Pste3g01409	327	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	94	106	IPR008271	GO:0004672\|GO:0006468
	Pste3g01409	327	SUPERFAMILY	Protein kinase-like (PK-like)	2	268	IPR011009	-
	Pste3g01409	327	FunFam	Serine/threonine-protein kinase SRK2A	55	243	-	-
	Pste3g01409	327	MobiDBLite	consensus disorder prediction	274	327	-	-
	Pste3g01409	327	Gene3D	Phosphorylase Kinase; domain 1	1	42	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g01409	Pste-Chr3	8747301	8751277	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g01409	3	238	CBL-interacting serine-threonine protein kinases	AT4G24400	39.630	7.41e-57	187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Pste3g01409		Pkinase	3.9e-53	CL0016